Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 2.1e-127 459.5 327 100.0
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 7.0e-115 417.9 328 75.3
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 1.3e-76 290.8 254 65.4
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 2.5e-72 276.6 252 63.1
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 2.5e-72 276.6 252 63.5
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 5.6e-72 275.4 252 63.1
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.3e-71 274.2 252 61.9
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.8e-71 273.1 252 61.9
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.8e-71 272.3 252 61.9
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.8e-71 272.3 252 62.3
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.8e-71 272.3 252 62.3
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 4.8e-71 272.3 252 62.3
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 1.1e-70 271.2 252 61.9
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.1e-70 271.2 252 61.9
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.1e-70 269.6 252 61.5
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.0e-70 269.2 252 61.5
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.3e-70 268.9 252 61.5
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 6.9e-70 268.5 252 61.1
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 9.0e-70 268.1 252 61.5
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 9.0e-70 268.1 252 62.3
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 9.0e-70 268.1 252 61.5
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-69 267.7 252 61.1
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 1.5e-69 267.3 252 61.9
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 3.4e-69 266.2 250 62.4
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 3.4e-69 266.2 252 60.3
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 4.5e-69 265.8 252 61.1
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.8e-69 265.4 252 61.1
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 5.8e-69 265.4 251 61.8
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 1.0e-68 264.6 252 61.1
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.0e-68 264.6 252 60.3
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 1.0e-68 264.6 252 60.3
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.7e-68 263.8 252 59.5
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.7e-68 263.8 258 60.5
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.7e-68 263.8 258 60.5
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.7e-68 263.8 252 60.3
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.2e-68 263.5 252 59.9
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.2e-68 263.5 252 59.9
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 2.9e-68 263.1 252 60.3
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 3.8e-68 262.7 252 60.3
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 4.9e-68 262.3 252 60.3
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 6.5e-68 261.9 250 60.8
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 6.5e-68 261.9 254 60.2
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 6.5e-68 261.9 252 59.9
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 6.5e-68 261.9 252 60.3
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.1e-67 261.2 252 59.5
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 1.9e-67 260.4 252 59.9
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 2.5e-67 260.0 252 59.9
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 2.5e-67 260.0 252 60.3
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 3.2e-67 259.6 252 60.3
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 3.2e-67 259.6 252 59.5
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 4.2e-67 259.2 252 58.3
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 5.5e-67 258.8 250 60.4
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 7.1e-67 258.5 252 59.9
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 9.3e-67 258.1 252 57.9
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.2e-66 257.7 252 59.1
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 1.2e-66 257.7 252 59.1
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.6e-66 257.3 250 60.0
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 1.6e-66 257.3 252 57.9
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 3.5e-66 256.1 250 59.2
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 4.6e-66 255.8 251 58.6
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 4.6e-66 255.8 252 59.1
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 6.0e-66 255.4 252 59.1
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 7.9e-66 255.0 252 58.7
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 7.9e-66 255.0 252 58.7
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 2.3e-65 253.4 250 58.8
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 3.9e-65 252.7 252 57.9
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 3.9e-65 252.7 252 58.7
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 6.7e-65 251.9 254 57.5
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 6.7e-65 251.9 254 57.9
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 8.7e-65 251.5 254 57.5
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-64 251.1 252 59.9
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.1e-64 251.1 250 58.4
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.5e-64 250.8 252 57.5
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 1.9e-64 250.4 265 55.8
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 2.5e-64 250.0 252 57.5
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 3.3e-64 249.6 252 57.5
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 5.7e-64 248.8 292 52.7
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 5.7e-64 248.8 257 58.0
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.7e-64 248.8 263 57.4
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 7.4e-64 248.4 252 57.9
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 9.6e-64 248.1 263 55.9
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 9.6e-64 248.1 254 55.9
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 1.3e-63 247.7 200 68.5
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.3e-63 247.7 254 56.3
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.3e-63 247.7 264 57.2
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 1.3e-63 247.7 254 55.9
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.6e-63 247.3 263 55.9
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 3.7e-63 246.1 254 56.7
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 4.8e-63 245.7 200 66.5
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 4.8e-63 245.7 254 56.3
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.2e-63 245.4 271 56.5
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 8.2e-63 245.0 263 55.5
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 1.4e-62 244.2 252 56.7
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 1.4e-62 244.2 252 55.6
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.4e-62 244.2 251 57.4
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.8e-62 243.8 252 57.9
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 3.1e-62 243.0 206 67.0
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 3.1e-62 243.0 252 56.7
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 4.0e-62 242.7 252 56.3
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.0e-62 242.7 252 56.3
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 5.3e-62 242.3 250 56.4
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 5.3e-62 242.3 252 55.2
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 6.9e-62 241.9 250 57.6
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.2e-61 241.1 252 57.1
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.5e-61 240.7 252 57.5
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 1.5e-61 240.7 250 56.4
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 4.5e-61 239.2 250 56.0
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.5e-61 239.2 252 56.0
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 5.8e-61 238.8 250 56.0
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 5.8e-61 238.8 250 56.4
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 2.2e-60 236.9 252 55.6
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 2.9e-60 236.5 252 54.4
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 2.9e-60 236.5 252 55.2
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 3.8e-60 236.1 248 56.0
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 5.0e-60 235.7 251 56.2
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 6.5e-60 235.3 251 56.2
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 8.4e-60 235.0 286 50.7
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 8.4e-60 235.0 252 56.7
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.4e-59 234.2 252 54.8
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.9e-59 233.8 253 55.7
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 2.5e-59 233.4 252 54.4
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 3.2e-59 233.0 253 53.4
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 4.2e-59 232.6 253 56.9
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 3.9e-57 226.1 248 50.0
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.9e-56 223.8 252 51.2
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 4.3e-56 222.6 254 50.0
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 9.7e-56 221.5 252 52.0
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 9.7e-56 221.5 263 49.4
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 4.8e-55 219.2 160 73.1
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.5e-53 214.2 250 52.8
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.5e-53 212.6 219 56.2
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.7e-52 210.7 223 56.5
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 3.2e-51 206.5 254 49.6
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 9.7e-48 194.9 214 53.7
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 7.7e-45 185.3 252 44.8
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.6e-42 177.6 160 63.1
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 3.6e-34 149.8 219 42.5
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 3.6e-34 149.8 257 43.6
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 1.4e-33 147.9 168 55.4
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 5.2e-33 146.0 105 68.6
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 5.2e-33 146.0 105 68.6
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 9.7e-32 141.7 253 40.3
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 6.3e-31 139.0 97 71.1
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 1.0e-28 131.7 78 79.5
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 5.0e-28 129.4 178 47.8
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 5.0e-28 129.4 173 48.6
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 4.7e-26 122.9 177 47.5
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 4.7e-26 122.9 177 47.5
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 6.8e-25 119.0 171 45.0
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 2.7e-18 97.1 158 43.0
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.7e-15 87.8 58 75.9
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 8.3e-15 85.5 92 55.4
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.1e-14 83.2 52 82.7
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 6.6e-12 75.9 67 65.7
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 7.2e-11 72.4 68 52.9
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 2.8e-10 70.5 68 52.9
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 5.7e-08 62.8 84 42.9
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 3.7e-07 60.1 40 67.5
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 2.4e-06 57.4 39 66.7
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 2.4e-06 57.4 39 66.7


User provided reference genes

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