Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0230600 Oryza sativa ssp. japonica HOM05D002778 ORTHO05D003112 1.1e-37 159.5 82 100.0
Os04g0606200 Oryza sativa ssp. japonica HOM05D002778 ORTHO05D003112 1.1e-19 99.8 63 73.0
Zm00001eb430460 Zea mays HOM05D002778 ORTHO05D003112 1.0e-17 93.2 76 63.2
Zm00001eb071510 Zea mays HOM05D002778 ORTHO05D003112 1.7e-17 92.4 61 68.9
Zm00001eb071530 Zea mays HOM05D002778 ORTHO05D003112 2.5e-16 88.6 69 60.9
Eucgr.C02016 Eucalyptus grandis HOM05D002778 ORTHO05D003112 9.0e-11 70.1 56 62.5
Eucgr.J02702 Eucalyptus grandis HOM05D002778 ORTHO05D003112 9.0e-11 70.1 56 62.5
Solyc07g008430.2 Solanum lycopersicum HOM05D002778 ORTHO05D003112 2.0e-10 68.9 56 55.4
Sopen07g004330 Solanum pennellii HOM05D002778 ORTHO05D003112 2.0e-10 68.9 56 55.4
Os06g0660400 Oryza sativa ssp. japonica HOM05D002778 ORTHO05D003112 2.6e-10 68.6 60 55.0
HPP92_017129 Vanilla planifolia HOM05D002778 ORTHO05D003112 2.6e-10 68.6 59 55.9
PGSC0003DMG400021029 Solanum tuberosum HOM05D002778 ORTHO05D003112 5.8e-10 67.4 56 53.6
Zm00001eb389240 Zea mays HOM05D002778 ORTHO05D003112 5.8e-10 67.4 59 52.5
MD16G1246800 Malus domestica HOM05D002778 ORTHO05D003112 7.6e-10 67.0 56 53.6
Thecc.09G191000 Theobroma cacao HOM05D002778 ORTHO05D003112 7.6e-10 67.0 56 53.6
HPP92_000249 Vanilla planifolia HOM05D002778 ORTHO05D003112 1.3e-09 66.2 63 52.4
Zm00001eb181190 Zea mays HOM05D002778 ORTHO05D003112 2.9e-09 65.1 58 51.7
Duzib168G0124 Durio zibethinus HOM05D002778 ORTHO05D003112 5.0e-09 64.3 56 53.6
RcHm_v2.0_Chr4g0399141 Rosa chinensis HOM05D002778 ORTHO05D003112 5.0e-09 64.3 56 51.8
CANSAT35G1850 Cannabis sativa HOM05D002778 ORTHO05D003112 6.5e-09 63.9 56 50.0
Eucgr.C02015 Eucalyptus grandis HOM05D002778 ORTHO05D003112 6.5e-09 63.9 56 57.1
MD13G1240400 Malus domestica HOM05D002778 ORTHO05D003112 8.4e-09 63.5 56 50.0
Nn8g40687 Nelumbo nucifera HOM05D002778 ORTHO05D003112 8.4e-09 63.5 56 55.4
BcaB03g12624 Brassica carinata HOM05D002778 ORTHO05D003112 1.4e-08 62.8 56 51.8
C03p89030 Brassica napus HOM05D002778 ORTHO05D003112 1.4e-08 62.8 56 51.8
BolC3t21213H Brassica oleracea HOM05D002778 ORTHO05D003112 1.4e-08 62.8 56 51.8
Glyma.14G134900 Glycine max HOM05D002778 ORTHO05D003112 1.4e-08 62.8 55 54.5
BcaC01g01200 Brassica carinata HOM05D002778 ORTHO05D003112 1.9e-08 62.4 56 51.8
Duzib150G0922 Durio zibethinus HOM05D002778 ORTHO05D003112 2.5e-08 62.0 56 51.8
Prupe.1G073400 Prunus persica HOM05D002778 ORTHO05D003112 2.5e-08 62.0 56 48.2
Manes.09G005702 Manihot esculenta HOM05D002778 ORTHO05D003112 3.2e-08 61.6 55 52.7
Potri.018G140500 Populus trichocarpa HOM05D002778 ORTHO05D003112 3.2e-08 61.6 55 50.9
A01p08270 Brassica napus HOM05D002778 ORTHO05D003112 4.2e-08 61.2 56 50.0
BraA01t00772Z Brassica rapa HOM05D002778 ORTHO05D003112 4.2e-08 61.2 56 50.0
CAN.G1185.1 Capsicum annuum HOM05D002778 ORTHO05D003112 4.2e-08 61.2 56 50.0
Glyma.17G197800 Glycine max HOM05D002778 ORTHO05D003112 4.2e-08 61.2 58 51.7
PGSC0003DMG400021028 Solanum tuberosum HOM05D002778 ORTHO05D003112 4.2e-08 61.2 56 50.0
A03p59330 Brassica napus HOM05D002778 ORTHO05D003112 5.5e-08 60.8 56 51.8
BraA03t14990Z Brassica rapa HOM05D002778 ORTHO05D003112 5.5e-08 60.8 56 51.8
CSS0015542 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 5.5e-08 60.8 56 48.2
CiPaw.07G198400 Carya illinoinensis HOM05D002778 ORTHO05D003112 5.5e-08 60.8 64 43.8
MBI16_g36963_MAGBIO Magnolia biondii HOM05D002778 ORTHO05D003112 5.5e-08 60.8 57 49.1
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 5.5e-08 60.8 56 57.1
PGR142G4130 Punica granatum HOM05D002778 ORTHO05D003112 5.5e-08 60.8 60 51.7
Sp7g27720 Schrenkiella parvula HOM05D002778 ORTHO05D003112 5.5e-08 60.8 56 51.8
AT4G29905 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 50.0
BcaC09g52196 Brassica carinata HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 50.0
BcaNung00501 Brassica carinata HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 50.0
C01p09290 Brassica napus HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 50.0
C07p57350 Brassica napus HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 50.0
BolC1t00918H Brassica oleracea HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 50.0
BolC7t46204H Brassica oleracea HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 50.0
Nn8g40694 Nelumbo nucifera HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 50.0
THA.LOC104813502 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 7.1e-08 60.5 56 51.8
TWI75G0683 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 7.1e-08 60.5 58 51.7
AL7G22340 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 9.3e-08 60.1 56 50.0
BcaC09g51768 Brassica carinata HOM05D002778 ORTHO05D003112 9.3e-08 60.1 56 48.2
COL.COLO4_19026 Corchorus olitorius HOM05D002778 ORTHO05D003112 9.3e-08 60.1 56 53.6
DCAR_018016 Daucus carota HOM05D002778 ORTHO05D003112 9.3e-08 60.1 56 55.4
Duzib187G1568 Durio zibethinus HOM05D002778 ORTHO05D003112 9.3e-08 60.1 56 53.6
Glyma.13G101500 Glycine max HOM05D002778 ORTHO05D003112 9.3e-08 60.1 55 49.1
Glyma.17G058100 Glycine max HOM05D002778 ORTHO05D003112 9.3e-08 60.1 55 49.1
Carub.0007s1074 Capsella rubella HOM05D002778 ORTHO05D003112 1.2e-07 59.7 56 50.0
CARHR237810 Cardamine hirsuta HOM05D002778 ORTHO05D003112 1.2e-07 59.7 56 50.0
Gohir.A05G001500 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.2e-07 59.7 57 50.9
Gohir.D05G001800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.2e-07 59.7 57 50.9
Gorai.009G001700 Gossypium raimondii HOM05D002778 ORTHO05D003112 1.2e-07 59.7 57 50.9
Phvul.001G059600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 1.2e-07 59.7 55 49.1
Phvul.009G234900 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 1.2e-07 59.7 55 49.1
QL12p025213 Quercus lobata HOM05D002778 ORTHO05D003112 1.2e-07 59.7 56 51.8
Manes.14G162900 Manihot esculenta HOM05D002778 ORTHO05D003112 1.6e-07 59.3 55 49.1
Oeu012391.1 Olea europaea HOM05D002778 ORTHO05D003112 1.6e-07 59.3 57 49.1
Potri.018G007300 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.6e-07 59.3 55 50.9
AT5G57123 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 2.1e-07 58.9 56 50.0
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 2.1e-07 58.9 56 50.0
Ca_21261_v3 Cicer arietinum L. HOM05D002778 ORTHO05D003112 2.1e-07 58.9 54 48.1
MELO3C011187.2 Cucumis melo HOM05D002778 ORTHO05D003112 2.1e-07 58.9 56 50.0
Medtr2g038220 Medicago truncatula HOM05D002778 ORTHO05D003112 2.1e-07 58.9 55 50.9
PSO063G5619 Papaver somniferum HOM05D002778 ORTHO05D003112 2.1e-07 58.9 60 45.0
Phvul.003G140426 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 2.1e-07 58.9 55 47.3
Sed0006590 Sechium edule HOM05D002778 ORTHO05D003112 2.1e-07 58.9 56 50.0
TWI36G0848 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 2.1e-07 58.9 56 50.0
Eucgr.C02014 Eucalyptus grandis HOM05D002778 ORTHO05D003112 2.7e-07 58.5 56 50.0
Gohir.A03G021466 Gossypium hirsutum HOM05D002778 ORTHO05D003112 2.7e-07 58.5 59 49.2
Gohir.D03G147300 Gossypium hirsutum HOM05D002778 ORTHO05D003112 2.7e-07 58.5 59 49.2
Gohir.D05G066400 Gossypium hirsutum HOM05D002778 ORTHO05D003112 2.7e-07 58.5 56 51.8
Gorai.003G154800 Gossypium raimondii HOM05D002778 ORTHO05D003112 2.7e-07 58.5 59 49.2
Gorai.009G067200 Gossypium raimondii HOM05D002778 ORTHO05D003112 2.7e-07 58.5 56 51.8
HanXRQChr17g0538041 Helianthus annuus HOM05D002778 ORTHO05D003112 2.7e-07 58.5 56 46.4
PSO170G3710 Papaver somniferum HOM05D002778 ORTHO05D003112 2.7e-07 58.5 60 45.0
Sed0006164 Sechium edule HOM05D002778 ORTHO05D003112 2.7e-07 58.5 55 47.3
THA.LOC104803960 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 2.7e-07 58.5 56 51.8
Cpa.g.sc23.21 Carica papaya HOM05D002778 ORTHO05D003112 3.5e-07 58.2 56 50.0
CiPaw.08G031900 Carya illinoinensis HOM05D002778 ORTHO05D003112 3.5e-07 58.2 55 45.5
Lj4g0026496 Lotus japonicus HOM05D002778 ORTHO05D003112 3.5e-07 58.2 55 43.6
Manes.15G098500 Manihot esculenta HOM05D002778 ORTHO05D003112 3.5e-07 58.2 56 51.8
Sopen07g004320 Solanum pennellii HOM05D002778 ORTHO05D003112 3.5e-07 58.2 55 50.9
Thecc.09G007900 Theobroma cacao HOM05D002778 ORTHO05D003112 3.5e-07 58.2 56 53.6
CiPaw.08G020200 Carya illinoinensis HOM05D002778 ORTHO05D003112 4.6e-07 57.8 58 46.6
Ciclev10010727m.g Citrus clementina HOM05D002778 ORTHO05D003112 4.6e-07 57.8 56 50.0
Lalb_Chr07g0180721 Lupinus albus HOM05D002778 ORTHO05D003112 4.6e-07 57.8 57 45.6
Manes.03G079400 Manihot esculenta HOM05D002778 ORTHO05D003112 4.6e-07 57.8 56 50.0
CAN.G837.3 Capsicum annuum HOM05D002778 ORTHO05D003112 6.1e-07 57.4 55 50.9
ClCG06G013690 Citrullus lanatus HOM05D002778 ORTHO05D003112 6.1e-07 57.4 55 49.1
Migut.J00787 Erythranthe guttata HOM05D002778 ORTHO05D003112 6.1e-07 57.4 56 50.0
Gohir.A05G063800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 6.1e-07 57.4 56 50.0
HanXRQChr10g0308951 Helianthus annuus HOM05D002778 ORTHO05D003112 6.1e-07 57.4 60 43.3
Lj6g0016516 Lotus japonicus HOM05D002778 ORTHO05D003112 6.1e-07 57.4 55 49.1
TPR.G7055 Trifolium pratense HOM05D002778 ORTHO05D003112 6.1e-07 57.4 55 47.3
Haze_21753 Corylus avellana HOM05D002778 ORTHO05D003112 7.9e-07 57.0 56 48.2
Glyma.09G060700 Glycine max HOM05D002778 ORTHO05D003112 7.9e-07 57.0 55 47.3
Phvul.009G101600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 7.9e-07 57.0 59 45.8
PGR102G1539 Punica granatum HOM05D002778 ORTHO05D003112 7.9e-07 57.0 56 48.2
ATR0580G016 Amborella trichopoda HOM05D002778 ORTHO05D003112 1.0e-06 56.6 57 52.6
AL8G33050 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
BcaB08g36001 Brassica carinata HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
BcaC04g20009 Brassica carinata HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
A10p14450 Brassica napus HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
C09p48860 Brassica napus HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
BolC9t57733H Brassica oleracea HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
Carub.0008s1763 Capsella rubella HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
CARHR270900 Cardamine hirsuta HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
Thhalv10015218m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 48.2
Lsat_1_v5_gn_3_19520 Lactuca sativa HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 42.9
Sed0003600 Sechium edule HOM05D002778 ORTHO05D003112 1.0e-06 56.6 56 46.4
BcaB05g22320 Brassica carinata HOM05D002778 ORTHO05D003112 1.3e-06 56.2 57 47.4
CAN.G809.78 Capsicum annuum HOM05D002778 ORTHO05D003112 1.3e-06 56.2 56 46.4
MELO3C017419.2 Cucumis melo HOM05D002778 ORTHO05D003112 1.3e-06 56.2 55 47.3
CsaV3_1G031970 Cucumis sativus L. HOM05D002778 ORTHO05D003112 1.3e-06 56.2 55 47.3
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 1.3e-06 56.2 56 46.4
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 1.3e-06 56.2 56 46.4
Lalb_Chr23g0276751 Lupinus albus HOM05D002778 ORTHO05D003112 1.3e-06 56.2 55 45.5
SalBow4G0971 Salvia bowleyana HOM05D002778 ORTHO05D003112 1.3e-06 56.2 56 50.0
THA.LOC104811766 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 1.3e-06 56.2 56 48.2
TPR.G5389 Trifolium pratense HOM05D002778 ORTHO05D003112 1.3e-06 56.2 54 46.3
Glyma.15G167300 Glycine max HOM05D002778 ORTHO05D003112 1.8e-06 55.8 55 45.5
Lalb_Chr13g0299861 Lupinus albus HOM05D002778 ORTHO05D003112 1.8e-06 55.8 55 45.5
Peaxi162Scf00046g00231 Petunia axillaris HOM05D002778 ORTHO05D003112 1.8e-06 55.8 59 45.8
Potri.006G073400 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.8e-06 55.8 55 45.5
BcaB01g04445 Brassica carinata HOM05D002778 ORTHO05D003112 2.3e-06 55.5 56 46.4
BcaC01g06467 Brassica carinata HOM05D002778 ORTHO05D003112 2.3e-06 55.5 56 46.4
BcaC01g06468 Brassica carinata HOM05D002778 ORTHO05D003112 2.3e-06 55.5 56 46.4
BcaNung05127 Brassica carinata HOM05D002778 ORTHO05D003112 2.3e-06 55.5 56 46.4
A03p12970 Brassica napus HOM05D002778 ORTHO05D003112 2.3e-06 55.5 56 46.4
C03p15140 Brassica napus HOM05D002778 ORTHO05D003112 2.3e-06 55.5 56 46.4
BraA03t10605Z Brassica rapa HOM05D002778 ORTHO05D003112 2.3e-06 55.5 56 46.4
MELO3C003964.2 Cucumis melo HOM05D002778 ORTHO05D003112 2.3e-06 55.5 55 47.3
Lalb_Chr12g0199661 Lupinus albus HOM05D002778 ORTHO05D003112 2.3e-06 55.5 59 44.1
TWI31G1116 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 2.3e-06 55.5 56 46.4
C02p14570 Brassica napus HOM05D002778 ORTHO05D003112 3.0e-06 55.1 56 46.4
BolC2t07584H Brassica oleracea HOM05D002778 ORTHO05D003112 3.0e-06 55.1 56 46.4
Cfa013463 Carpinus fangiana HOM05D002778 ORTHO05D003112 3.0e-06 55.1 55 45.5
DCAR_018017 Daucus carota HOM05D002778 ORTHO05D003112 3.0e-06 55.1 59 49.2
Medtr4g127190 Medicago truncatula HOM05D002778 ORTHO05D003112 3.0e-06 55.1 54 42.6
BolC3t13955H Brassica oleracea HOM05D002778 ORTHO05D003112 3.9e-06 54.7 56 46.4
Cfa013278 Carpinus fangiana HOM05D002778 ORTHO05D003112 3.9e-06 54.7 56 46.4
Haze_22042 Corylus avellana HOM05D002778 ORTHO05D003112 3.9e-06 54.7 55 45.5
Lalb_Chr08g0243521 Lupinus albus HOM05D002778 ORTHO05D003112 3.9e-06 54.7 56 42.9
BraA10t43536Z Brassica rapa HOM05D002778 ORTHO05D003112 5.1e-06 54.3 58 43.1
Lsat_1_v5_gn_5_83800 Lactuca sativa HOM05D002778 ORTHO05D003112 5.1e-06 54.3 60 41.7
Manes.06G018000 Manihot esculenta HOM05D002778 ORTHO05D003112 5.1e-06 54.3 55 45.5
Aa31LG3G16440 Aethionema arabicum HOM05D002778 ORTHO05D003112 6.7e-06 53.9 56 44.6
Cc01_g10000 Coffea canephora HOM05D002778 ORTHO05D003112 6.7e-06 53.9 55 49.1
Manes.06G018100 Manihot esculenta HOM05D002778 ORTHO05D003112 6.7e-06 53.9 54 50.0
PSO063G3231 Papaver somniferum HOM05D002778 ORTHO05D003112 6.7e-06 53.9 54 44.4
PSO170G0913 Papaver somniferum HOM05D002778 ORTHO05D003112 6.7e-06 53.9 54 44.4
THA.LOC104814646 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 6.7e-06 53.9 56 48.2
Thhalv10016058m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 8.7e-06 53.5 56 44.6
Manes.06G017900 Manihot esculenta HOM05D002778 ORTHO05D003112 8.7e-06 53.5 55 47.3
PSO063G0977 Papaver somniferum HOM05D002778 ORTHO05D003112 8.7e-06 53.5 58 44.8
RcHm_v2.0_Chr6g0305041 Rosa chinensis HOM05D002778 ORTHO05D003112 8.7e-06 53.5 56 50.0


User provided reference genes

Program Settings