Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.7e-183 645.2 324 100.0
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.6e-146 522.3 321 83.2
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 8.0e-111 404.4 313 66.5
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.4e-110 403.7 301 67.1
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 6.3e-108 394.8 307 64.5
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.3e-108 394.4 303 63.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.4e-107 393.7 303 66.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 7.0e-107 391.3 304 65.8
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 9.1e-107 391.0 303 65.0
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.5e-106 389.0 304 65.8
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-105 386.7 304 64.5
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.9e-104 383.3 315 61.6
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.9e-104 383.3 314 62.4
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.5e-104 382.9 304 62.2
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 7.2e-104 381.3 304 62.5
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.2e-103 380.6 306 61.1
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.2e-103 380.6 312 62.8
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 2.7e-103 379.4 304 63.2
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 3.6e-103 379.0 304 63.2
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 4.7e-103 378.6 315 61.3
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 6.1e-103 378.3 308 61.7
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 8.0e-103 377.9 304 62.5
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.4e-102 377.1 307 60.6
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.2e-102 375.2 308 61.4
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 6.8e-102 374.8 310 62.3
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.2e-101 374.0 310 60.6
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.5e-101 373.6 315 62.5
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.5e-101 373.6 303 61.1
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.0e-101 373.2 306 61.1
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 2.6e-101 372.9 304 61.8
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 5.7e-101 371.7 304 61.8
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 9.8e-101 370.9 306 60.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 9.8e-101 370.9 310 60.3
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.3e-100 370.5 308 61.0
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.7e-100 370.2 306 60.8
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.2e-100 369.8 308 62.0
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.2e-100 369.8 305 62.3
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.7e-100 369.0 310 60.3
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 4.8e-100 368.6 274 66.8
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 6.3e-100 368.2 313 61.7
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 6.3e-100 368.2 308 60.7
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 8.3e-100 367.9 304 60.5
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.1e-99 367.5 304 61.2
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.1e-99 367.5 304 61.2
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.1e-99 367.5 310 59.7
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.8e-99 366.7 312 59.9
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.4e-99 366.3 310 60.0
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 7.0e-99 364.8 304 61.5
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 9.1e-99 364.4 315 58.4
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.6e-98 363.6 309 60.2
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.6e-98 363.6 297 62.6
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 3.5e-98 362.5 313 58.5
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.9e-98 361.7 277 66.4
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 5.9e-98 361.7 308 60.4
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 5.9e-98 361.7 269 68.8
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.3e-97 360.5 304 60.9
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.3e-97 360.5 305 60.0
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.7e-97 360.1 313 61.0
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.3e-97 359.8 303 61.7
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 6.6e-97 358.2 303 62.4
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 6.6e-97 358.2 330 58.5
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.9e-96 356.7 347 56.2
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.5e-96 356.3 314 60.2
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 2.5e-96 356.3 327 57.5
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 3.3e-96 355.9 313 58.5
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 3.3e-96 355.9 310 59.4
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 5.5e-96 355.1 336 56.0
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.5e-96 355.1 334 58.4
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 9.5e-96 354.4 309 58.3
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.6e-95 353.6 309 60.2
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.6e-95 353.6 304 59.2
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.1e-95 353.2 325 58.5
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.8e-95 352.8 306 58.8
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 3.6e-95 352.4 306 58.5
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 8.0e-95 351.3 304 59.2
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 8.0e-95 351.3 316 58.2
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 6.8e-94 348.2 313 56.9
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 6.8e-94 348.2 304 57.6
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 6.8e-94 348.2 304 57.6
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 8.9e-94 347.8 312 56.1
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.2e-93 347.4 301 56.1
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.0e-93 346.7 304 57.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.0e-93 346.7 301 58.8
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.6e-93 346.3 304 57.2
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 4.4e-93 345.5 313 56.2
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.5e-93 344.7 306 57.8
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 9.8e-93 344.4 311 56.6
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 9.8e-93 344.4 309 57.3
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.3e-92 344.0 318 56.3
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.7e-92 343.6 276 62.7
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.7e-92 343.6 306 57.5
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 2.2e-92 343.2 304 57.9
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 4.9e-92 342.0 271 62.7
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 6.3e-92 341.7 311 56.3
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 6.3e-92 341.7 302 56.0
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 8.3e-92 341.3 315 56.5
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 8.3e-92 341.3 315 56.5
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 8.3e-92 341.3 304 56.2
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 8.3e-92 341.3 304 55.6
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 5.4e-91 338.6 309 57.0
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 9.2e-91 337.8 311 55.6
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.6e-90 337.0 332 54.2
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.0e-90 336.7 378 49.2
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.3e-89 333.2 307 56.0
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 2.9e-89 332.8 304 55.9
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 6.6e-89 331.6 273 61.9
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 2.5e-88 329.7 279 60.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 3.3e-88 329.3 305 56.7
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.6e-87 327.0 291 56.7
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 8.0e-87 324.7 288 59.4
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.0e-86 324.3 308 58.1
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.8e-86 323.6 342 50.6
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 4.0e-86 322.4 307 54.4
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 5.8e-85 318.5 250 65.2
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 3.7e-84 315.8 349 49.9
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 3.7e-84 315.8 231 65.4
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.3e-81 307.4 231 64.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.1e-80 304.3 313 52.1
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.8e-79 299.7 314 51.9
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.1e-78 296.2 312 51.3
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.5e-77 291.6 257 58.8
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.2e-74 284.3 229 60.3
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.7e-71 272.3 304 50.7
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.2e-68 263.5 304 48.4
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.3e-65 254.2 197 63.5
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.7e-65 253.8 225 56.9
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.6e-65 251.5 214 60.3
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 9.9e-61 238.0 267 50.9
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.9e-60 236.5 212 56.6
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 6.4e-60 235.3 343 42.0
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 4.2e-59 232.6 371 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 3.9e-57 226.1 202 57.4
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.9e-57 226.1 441 37.6
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 6.6e-57 225.3 285 46.3
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.3e-55 221.1 160 66.2
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.4e-54 216.9 213 54.9
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 9.9e-53 211.5 186 57.0
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.4e-51 207.6 185 56.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 7.1e-51 205.3 175 60.6
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.3e-49 201.1 190 55.8
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.3e-48 196.4 238 47.5
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 7.3e-48 195.3 218 50.0
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 3.1e-46 189.9 167 56.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.3e-46 189.1 343 39.1
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.0e-45 187.2 162 60.5
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 4.5e-45 186.0 221 45.2
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 3.8e-44 183.0 213 50.2
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.6e-42 177.6 145 62.1
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.5e-40 170.2 137 66.4
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 9.6e-40 168.3 148 58.1
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.6e-39 167.5 134 61.9
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 4.8e-39 166.0 163 50.3
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.2e-37 161.4 148 56.8
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.2e-37 161.4 192 47.9
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.0e-37 160.6 132 62.1
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 3.2e-35 153.3 118 63.6
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 9.3e-35 151.8 116 63.8
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-30 137.9 176 44.9
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 2.3e-25 120.6 106 57.5
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.1e-25 119.4 139 48.2
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 1.5e-24 117.9 111 55.0
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 2.6e-21 107.1 138 47.1
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.1e-18 97.4 116 44.8
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 7.9e-18 95.5 56 76.8
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 5.0e-12 76.3 79 48.1
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.2e-11 73.2 90 45.6
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 4.2e-11 73.2 79 51.9
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.3e-09 67.4 43 67.4
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 3.0e-09 67.0 51 66.7
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 3.9e-09 66.6 79 48.1


User provided reference genes

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