Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 1.0e-174 616.7 324 100.0
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 9.8e-101 370.9 262 66.8
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 3.5e-98 362.5 273 64.5
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 1.5e-96 357.1 264 64.8
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 1.9e-96 356.7 258 67.1
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 2.5e-96 356.3 262 64.9
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 3.3e-96 355.9 262 64.1
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 5.5e-96 355.1 263 64.3
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 5.5e-96 355.1 274 64.6
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 7.2e-96 354.8 273 63.7
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 6.1e-95 351.7 262 64.9
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 8.0e-95 351.3 266 63.9
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 1.0e-94 350.9 260 63.8
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.4e-94 350.5 260 66.2
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 2.3e-94 349.7 275 62.5
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 3.0e-94 349.4 260 65.4
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 4.0e-94 349.0 260 64.6
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 5.2e-94 348.6 258 63.6
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 6.8e-94 348.2 258 65.9
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 6.8e-94 348.2 260 63.1
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 6.8e-94 348.2 274 62.8
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 8.9e-94 347.8 262 64.9
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 1.5e-93 347.1 264 64.0
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 2.6e-93 346.3 265 64.2
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 5.7e-93 345.1 278 61.2
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 7.5e-93 344.7 264 63.6
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 9.8e-93 344.4 264 63.3
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 9.8e-93 344.4 264 63.3
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 9.8e-93 344.4 264 63.6
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 9.8e-93 344.4 262 62.6
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 1.3e-92 344.0 263 62.7
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 1.7e-92 343.6 264 64.0
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 2.2e-92 343.2 264 61.4
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 2.8e-92 342.8 263 65.0
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 6.3e-92 341.7 258 62.8
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 6.3e-92 341.7 273 61.5
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 8.3e-92 341.3 258 62.8
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 8.3e-92 341.3 267 63.3
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 8.3e-92 341.3 264 61.7
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 1.1e-91 340.9 261 62.5
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 1.1e-91 340.9 261 63.6
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 3.2e-91 339.3 263 62.0
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 3.2e-91 339.3 265 62.3
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 5.4e-91 338.6 258 64.0
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 5.4e-91 338.6 265 62.3
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 7.0e-91 338.2 262 62.2
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 1.6e-90 337.0 271 59.4
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 1.6e-90 337.0 275 59.6
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 3.5e-90 335.9 273 60.4
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 5.9e-90 335.1 263 60.5
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 7.8e-90 334.7 263 60.8
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 7.8e-90 334.7 311 55.9
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 1.0e-89 334.3 271 60.5
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 1.7e-89 333.6 258 60.9
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 2.3e-89 333.2 264 62.5
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 2.9e-89 332.8 258 60.9
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 2.9e-89 332.8 258 62.0
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.9e-89 332.8 261 59.8
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 2.9e-89 332.8 264 63.6
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 3.9e-89 332.4 261 59.8
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 3.9e-89 332.4 262 59.9
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 1.9e-88 330.1 262 61.5
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.9e-88 330.1 260 60.8
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 1.9e-88 330.1 260 61.2
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 3.3e-88 329.3 265 59.6
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.2e-87 327.4 257 59.9
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.1e-87 326.6 257 60.3
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 4.7e-87 325.5 253 61.3
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 6.1e-87 325.1 295 56.9
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 6.1e-87 325.1 260 60.0
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 6.1e-87 325.1 263 59.7
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 6.1e-87 325.1 293 56.3
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.8e-86 323.6 253 60.9
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 3.1e-86 322.8 262 59.5
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 2.2e-84 316.6 265 58.5
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 2.9e-84 316.2 262 61.5
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 8.3e-84 314.7 260 58.1
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 7.0e-83 311.6 265 57.0
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 9.2e-83 311.2 262 58.0
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 1.2e-82 310.8 269 56.9
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 6.0e-82 308.5 275 55.6
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 1.0e-81 307.8 231 63.2
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 3.9e-81 305.8 253 58.5
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 3.3e-80 302.8 279 55.9
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 4.3e-80 302.4 259 56.8
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 4.3e-80 302.4 262 58.0
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 9.5e-80 301.2 276 55.8
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 2.8e-79 299.7 272 55.1
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 8.0e-79 298.1 264 56.4
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 1.4e-78 297.4 271 56.8
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 5.2e-78 295.4 269 56.9
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 2.0e-77 293.5 259 55.6
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 2.9e-76 289.7 239 58.6
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 2.1e-74 283.5 259 56.4
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 2.3e-73 280.0 313 47.9
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 1.4e-70 270.8 198 65.7
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 3.1e-70 269.6 300 49.0
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 6.6e-65 251.9 236 63.1
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.6e-63 247.3 200 58.5
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 4.7e-63 245.7 203 57.6
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 6.2e-63 245.4 188 60.1
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.5e-61 240.7 189 63.0
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 7.6e-61 238.4 213 56.3
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.7e-60 237.3 300 46.0
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 4.9e-60 235.7 259 49.0
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 4.9e-60 235.7 259 49.0
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 2.4e-59 233.4 163 68.1
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 1.6e-58 230.7 263 46.0
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 2.7e-58 229.9 172 64.0
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 1.3e-57 227.6 221 53.8
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 1.5e-53 214.2 266 41.0
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 1.7e-52 210.7 165 61.2
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.9e-46 188.7 146 62.3
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 4.0e-38 162.9 306 33.7
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 7.6e-37 158.7 117 64.1
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 5.7e-32 142.5 162 48.8
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 2.5e-27 127.1 144 47.2
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 3.9e-25 119.8 205 37.6
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 3.9e-25 119.8 154 46.8
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 8.7e-25 118.6 171 42.7
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 1.1e-22 111.7 279 30.5
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 9.0e-22 108.6 81 59.3
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.6e-21 107.1 83 56.6
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.3e-20 104.8 86 58.1
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 1.3e-20 104.8 78 62.8
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 9.4e-19 98.6 69 63.8
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 9.4e-19 98.6 146 44.5
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 4.6e-18 96.3 68 63.2
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 1.4e-17 94.7 84 53.6
MCO06G261 Micromonas commoda HOM05D005938 ORTHO05D044307 2.2e-07 60.8 148 31.1
Cre02.g083850 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D044307 2.8e-07 60.5 171 28.7


User provided reference genes

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