Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0156100 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 5.5e-34 147.1 78 100.0
Os08g0156000 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 4.4e-23 110.9 78 82.1
Zm00001eb172610 Zea mays HOM05D003385 ORTHO05D003844 1.8e-16 89.0 87 57.5
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 1.2e-07 59.7 42 66.7
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 3.4e-07 58.2 51 56.9
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 4.4e-07 57.8 52 51.9
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 5.8e-07 57.4 51 54.9
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 5.8e-07 57.4 46 60.9
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 5.8e-07 57.4 42 61.9
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 5.8e-07 57.4 42 66.7
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 5.8e-07 57.4 48 54.2
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 7.5e-07 57.0 47 55.3
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 7.5e-07 57.0 47 55.3
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 9.8e-07 56.6 51 54.9
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.3e-06 56.2 48 56.2
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 1.7e-06 55.8 52 50.0
Psat7g263040 Pisum sativum HOM05D003385 ORTHO05D003844 1.7e-06 55.8 65 38.5
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 1.7e-06 55.8 53 52.8
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 1.7e-06 55.8 47 61.7
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 2.9e-06 55.1 42 59.5
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.7e-06 54.7 47 51.1
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 3.7e-06 54.7 51 49.0
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 3.7e-06 54.7 47 55.3
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 3.7e-06 54.7 42 59.5
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 3.7e-06 54.7 47 51.1
Peaxi162Scf00002g01611 Petunia axillaris HOM05D003385 ORTHO05D003844 3.7e-06 54.7 42 61.9
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 4.9e-06 54.3 42 59.5
AagrBONN_evm.TU.Sc2ySwM_368.2415 Anthoceros agrestis HOM05D003385 ORTHO05D003844 4.9e-06 54.3 47 51.1
CSS0014285 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 4.9e-06 54.3 49 53.1
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 4.9e-06 54.3 42 61.9
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 4.9e-06 54.3 54 48.1
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 4.9e-06 54.3 42 59.5
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 6.4e-06 53.9 50 50.0
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 6.4e-06 53.9 42 59.5
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 6.4e-06 53.9 52 50.0
Rhsim06G0032500 Rhododendron simsii HOM05D003046 ORTHO05D003428 6.4e-06 53.9 44 54.5
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 8.3e-06 53.5 51 51.0
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 8.3e-06 53.5 51 51.0
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 8.3e-06 53.5 51 51.0
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 8.3e-06 53.5 47 53.2
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 8.3e-06 53.5 47 57.4
COL.COLO4_12504 Corchorus olitorius HOM05D003385 ORTHO05D003844 8.3e-06 53.5 54 51.9
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 8.3e-06 53.5 51 49.0
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 8.3e-06 53.5 52 50.0
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 8.3e-06 53.5 42 61.9
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 8.3e-06 53.5 52 48.1


User provided reference genes

Program Settings