Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0139500 Oryza sativa ssp. japonica HOM05D003873 ORTHO05D004127 8.6e-57 224.2 188 100.0
Os06g0696900 Oryza sativa ssp. japonica HOM05D003873 ORTHO05D004127 8.3e-52 207.6 138 96.4
Os06g0536333 Oryza sativa ssp. japonica HOM05D003873 ORTHO05D004127 1.7e-49 199.9 138 92.0
Zm00001eb016110 Zea mays HOM05D003873 ORTHO05D004127 1.1e-24 117.5 80 82.5
Os03g0336500 Oryza sativa ssp. japonica HOM05D003873 ORTHO05D004127 1.5e-24 117.1 63 93.7
Hund15823 Selenicereus undatus HOM05D003873 ORTHO05D004127 7.3e-16 88.2 51 82.4
EL10Ac2g02628 Beta vulgaris HOM05D003873 ORTHO05D004127 9.6e-16 87.8 53 77.4
AUR62024920 Chenopodium quinoa HOM05D003873 ORTHO05D004127 9.6e-16 87.8 74 63.5
arahy.Tifrunner.gnm1.ann1.26CUCK Arachis hypogaea HOM05D003873 ORTHO05D004127 1.6e-15 87.0 68 64.7
arahy.Tifrunner.gnm1.ann1.I2EQP5 Arachis hypogaea HOM05D003873 ORTHO05D004127 2.8e-15 86.3 68 64.7
Phvul.001G074800 Phaseolus vulgaris HOM05D003873 ORTHO05D004127 2.8e-15 86.3 61 72.1
TWI73G0123 Tripterygium wilfordii HOM05D003873 ORTHO05D004127 2.8e-15 86.3 82 58.5
VMungo0647G2356 Vigna mungo HOM05D003873 ORTHO05D004127 2.8e-15 86.3 61 72.1
AUR62030624 Chenopodium quinoa HOM05D003873 ORTHO05D004127 3.6e-15 85.9 74 62.2
Glyma.14G145000 Glycine max HOM05D003873 ORTHO05D004127 3.6e-15 85.9 61 72.1
Gohir.D10G185525 Gossypium hirsutum HOM05D003873 ORTHO05D004127 3.6e-15 85.9 81 58.0
Gorai.011G208100 Gossypium raimondii HOM05D003873 ORTHO05D004127 3.6e-15 85.9 81 58.0
Thecc.10G182600 Theobroma cacao HOM05D003873 ORTHO05D004127 8.1e-15 84.7 50 78.0
Aqoxy4G02390 Aquilegia oxysepala HOM05D003873 ORTHO05D004127 1.4e-14 84.0 64 67.2
Ciclev10032511m.g Citrus clementina HOM05D003873 ORTHO05D004127 1.4e-14 84.0 82 59.8
Duzib128G1260 Durio zibethinus HOM05D003873 ORTHO05D004127 1.4e-14 84.0 73 64.4
Nn2g10324 Nelumbo nucifera HOM05D003873 ORTHO05D004127 1.4e-14 84.0 51 80.4
Nitab4.5_0000375g0180 Nicotiana tabacum HOM05D003873 ORTHO05D004127 1.8e-14 83.6 84 57.1
HPP92_011975 Vanilla planifolia HOM05D003873 ORTHO05D004127 1.8e-14 83.6 50 80.0
CAN.G203.49 Capsicum annuum HOM05D003873 ORTHO05D004127 2.4e-14 83.2 61 68.9
Sc11g0005790 Simmondsia chinensis HOM05D003873 ORTHO05D004127 2.4e-14 83.2 74 62.2
C04p68430 Brassica napus HOM05D000114 ORTHO05D004127 3.1e-14 82.8 82 54.9
PSO017G6038 Papaver somniferum HOM05D003873 ORTHO05D004127 3.1e-14 82.8 61 67.2
PSO384G4386 Papaver somniferum HOM05D003873 ORTHO05D004127 3.1e-14 82.8 61 65.6
Peaxi162Scf00167g01217 Petunia axillaris HOM05D003873 ORTHO05D004127 3.1e-14 82.8 71 62.0
Psat6g035920 Pisum sativum HOM05D003873 ORTHO05D004127 3.1e-14 82.8 61 68.9
Sabra13G0064000 Salix brachista HOM05D003873 ORTHO05D004127 3.1e-14 82.8 53 73.6
TPR.G24518 Trifolium pratense HOM05D003873 ORTHO05D004127 3.1e-14 82.8 65 66.2
TWI09G0384 Tripterygium wilfordii HOM05D003873 ORTHO05D004127 3.1e-14 82.8 76 59.2
TAR369G0800 Trochodendron aralioides HOM05D003873 ORTHO05D004127 3.1e-14 82.8 50 78.0
Lj5g0010993 Lotus japonicus HOM05D003873 ORTHO05D004127 4.0e-14 82.4 79 57.0
MBI03_g22825_MAGBIO Magnolia biondii HOM05D003873 ORTHO05D004127 4.0e-14 82.4 59 72.9
Medtr1g007640 Medicago truncatula HOM05D003873 ORTHO05D004127 4.0e-14 82.4 74 60.8
Pp3c4_24790 Physcomitrium patens HOM05D003873 ORTHO05D004127 4.0e-14 82.4 64 68.8
PGR044G2565 Punica granatum HOM05D003873 ORTHO05D004127 4.0e-14 82.4 53 73.6
Sopen05g030800 Solanum pennellii HOM05D003873 ORTHO05D004127 4.0e-14 82.4 71 60.6
GSVIVG01032680001 Vitis vinifera HOM05D003873 ORTHO05D004127 4.0e-14 82.4 51 76.5
BcaC02g07324 Brassica carinata HOM05D000114 ORTHO05D004127 5.3e-14 82.0 77 57.1
Ca_12777_v3 Cicer arietinum L. HOM05D003873 ORTHO05D004127 5.3e-14 82.0 55 69.1
Nitab4.5_0002279g0070 Nicotiana tabacum HOM05D003873 ORTHO05D004127 5.3e-14 82.0 85 56.5
Oeu027748.1 Olea europaea HOM05D003873 ORTHO05D004127 5.3e-14 82.0 50 78.0
Pp3c13_3890 Physcomitrium patens HOM05D003873 ORTHO05D004127 5.3e-14 82.0 66 66.7
MSTRG.8896 Avicennia marina HOM05D003873 ORTHO05D004127 6.9e-14 81.6 83 54.2
Potri.013G092700 Populus trichocarpa HOM05D003873 ORTHO05D004127 6.9e-14 81.6 50 76.0
Aqoxy4G02389 Aquilegia oxysepala HOM05D003873 ORTHO05D004127 9.0e-14 81.3 55 70.9
Cpa.g.sc19.64 Carica papaya HOM05D003873 ORTHO05D004127 9.0e-14 81.3 82 57.3
Eucgr.J00121 Eucalyptus grandis HOM05D003873 ORTHO05D004127 9.0e-14 81.3 51 74.5
Lj8A55T86 Lonicera japonica HOM05D003873 ORTHO05D004127 9.0e-14 81.3 62 69.4
Manes.07G140600 Manihot esculenta HOM05D003873 ORTHO05D004127 9.0e-14 81.3 81 55.6
PSO170G1346 Papaver somniferum HOM05D003873 ORTHO05D004127 9.0e-14 81.3 68 58.8
Solyc05g052260.3 Solanum lycopersicum HOM05D003873 ORTHO05D004127 9.0e-14 81.3 81 58.0
PGSC0003DMG400011653 Solanum tuberosum HOM05D003873 ORTHO05D004127 9.0e-14 81.3 71 59.2
Dinv34475 Davidia involucrata HOM05D003873 ORTHO05D004127 1.2e-13 80.9 53 73.6
Lj1g0013289 Lotus japonicus HOM05D003873 ORTHO05D004127 1.2e-13 80.9 60 66.7
MD01G1164200 Malus domestica HOM05D003873 ORTHO05D004127 1.2e-13 80.9 70 62.9
Prupe.2G262000 Prunus persica HOM05D003873 ORTHO05D004127 1.2e-13 80.9 70 61.4
arahy.Tifrunner.gnm1.ann1.8SN1W1 Arachis hypogaea HOM05D003873 ORTHO05D004127 1.5e-13 80.5 68 63.2
Migut.F00602 Erythranthe guttata HOM05D003873 ORTHO05D004127 1.5e-13 80.5 53 69.8
PSO017G6047 Papaver somniferum HOM05D003873 ORTHO05D004127 1.5e-13 80.5 63 61.9
arahy.Tifrunner.gnm1.ann1.HNCJ3C Arachis hypogaea HOM05D003873 ORTHO05D004127 2.0e-13 80.1 68 63.2
COL.COLO4_19435 Corchorus olitorius HOM05D003873 ORTHO05D004127 2.0e-13 80.1 73 60.3
PSO210G1471 Papaver somniferum HOM05D000620 ORTHO05D000537 2.0e-13 80.1 68 57.4
PSO210G5103 Papaver somniferum HOM05D000620 ORTHO05D000537 2.0e-13 80.1 63 63.5
Thecc.10G182400 Theobroma cacao HOM05D003873 ORTHO05D004127 2.0e-13 80.1 50 76.0
AT2G40600 Arabidopsis thaliana HOM05D003873 ORTHO05D004127 2.6e-13 79.7 82 52.4
Ciclev10002574m.g Citrus clementina HOM05D003873 ORTHO05D004127 2.6e-13 79.7 53 69.8
Cc02_g05430 Coffea canephora HOM05D003873 ORTHO05D004127 2.6e-13 79.7 62 66.1
Gohir.A13G006800 Gossypium hirsutum HOM05D003873 ORTHO05D004127 2.6e-13 79.7 61 65.6
HanXRQChr17g0560751 Helianthus annuus HOM05D003873 ORTHO05D004127 2.6e-13 79.7 50 74.0
ATR1127G039 Amborella trichopoda HOM05D003873 ORTHO05D004127 3.4e-13 79.3 50 76.0
Lsat_1_v5_gn_8_13601 Lactuca sativa HOM05D003873 ORTHO05D004127 3.4e-13 79.3 84 58.3
Rhsim09G0185200 Rhododendron simsii HOM05D003873 ORTHO05D004127 3.4e-13 79.3 53 71.7
Carub.0004s2288 Capsella rubella HOM05D003873 ORTHO05D004127 4.5e-13 79.0 79 54.4
Gohir.D13G007000 Gossypium hirsutum HOM05D003873 ORTHO05D004127 4.5e-13 79.0 75 56.0
Gorai.013G007200 Gossypium raimondii HOM05D003873 ORTHO05D004127 4.5e-13 79.0 75 56.0
THA.LOC104824360 Tarenaya hassleriana HOM05D003873 ORTHO05D004127 4.5e-13 79.0 68 64.7
Thecc.10G182200 Theobroma cacao HOM05D003873 ORTHO05D004127 4.5e-13 79.0 73 63.0
A04p31040 Brassica napus HOM05D000114 ORTHO05D004127 5.8e-13 78.6 77 55.8
BolC4t28343H Brassica oleracea HOM05D000114 ORTHO05D004127 5.8e-13 78.6 82 52.4
BraA04t18560Z Brassica rapa HOM05D000114 ORTHO05D004127 5.8e-13 78.6 77 55.8
CDE06G1522 Ceratophyllum demersum HOM05D003873 ORTHO05D004127 5.8e-13 78.6 64 65.6
SGA_v2.0_scaffold60G20894 Striga asiatica HOM05D003873 ORTHO05D004127 5.8e-13 78.6 53 71.7
CSS0018140 Camellia sinensis var. sinensis HOM05D003873 ORTHO05D004127 7.6e-13 78.2 53 71.7
Cfa001222 Carpinus fangiana HOM05D003873 ORTHO05D004127 7.6e-13 78.2 78 55.1
PSO210G0156 Papaver somniferum HOM05D000620 ORTHO05D000537 7.6e-13 78.2 62 62.9
unitig_747.g21397 Utricularia gibba HOM05D003873 ORTHO05D004127 7.6e-13 78.2 61 65.6
ECA233G5425 Erigeron canadensis HOM05D003873 ORTHO05D004127 9.9e-13 77.8 50 74.0
BcaB06g29154 Brassica carinata HOM05D003873 ORTHO05D004127 1.3e-12 77.4 84 54.8
CANSAT56G3412 Cannabis sativa HOM05D003873 ORTHO05D004127 1.3e-12 77.4 69 59.4
CARHR135690 Cardamine hirsuta HOM05D003873 ORTHO05D004127 1.3e-12 77.4 80 55.0
PSO017G0702 Papaver somniferum HOM05D003873 ORTHO05D004127 1.3e-12 77.4 74 55.4
PSO384G3509 Papaver somniferum HOM05D003873 ORTHO05D004127 1.3e-12 77.4 74 55.4
RcHm_v2.0_Chr1g0371921 Rosa chinensis HOM05D003873 ORTHO05D004127 1.3e-12 77.4 67 58.2
SHI30175 Sapria himalayana HOM05D003873 ORTHO05D004127 1.3e-12 77.4 70 60.0
SEGI_07333 Sequoiadendron giganteum HOM05D003873 ORTHO05D004127 1.3e-12 77.4 68 58.8
Hma1.2p1_0292F.1_g115910 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 1.7e-12 77.0 53 69.8
COL.COLO4_19439 Corchorus olitorius HOM05D003873 ORTHO05D004127 2.2e-12 76.6 75 57.3
QL08p064588 Quercus lobata HOM05D003873 ORTHO05D004127 2.2e-12 76.6 53 67.9
Thhalv10017560m.g Eutrema salsugineum HOM05D003873 ORTHO05D004127 2.9e-12 76.3 80 55.0
FvH4_7g25700 Fragaria vesca HOM05D003873 ORTHO05D004127 2.9e-12 76.3 67 56.7
FAN06G3214 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.9e-12 76.3 67 56.7
SMO141G0289 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 2.9e-12 76.3 76 53.9
BcaB06g29155 Brassica carinata HOM05D003873 ORTHO05D004127 3.8e-12 75.9 61 63.9
A05p01810 Brassica napus HOM05D003873 ORTHO05D004127 4.9e-12 75.5 67 58.2
BraA05t19179Z Brassica rapa HOM05D003873 ORTHO05D004127 4.9e-12 75.5 67 58.2
CARHR135710 Cardamine hirsuta HOM05D003873 ORTHO05D004127 4.9e-12 75.5 62 62.9
Duzib114G0555 Durio zibethinus HOM05D003873 ORTHO05D004127 4.9e-12 75.5 73 60.3
FAN03G1281 Fragaria x ananassa HOM05D003873 ORTHO05D004127 4.9e-12 75.5 67 56.7
Lalb_Chr08g0239001 Lupinus albus HOM05D003873 ORTHO05D004127 4.9e-12 75.5 74 54.1
AL4G38460 Arabidopsis lyrata HOM05D003873 ORTHO05D004127 6.4e-12 75.1 64 62.5
BcaC02g12725 Brassica carinata HOM05D003873 ORTHO05D004127 6.4e-12 75.1 67 58.2
CiPaw.02G198500 Carya illinoinensis HOM05D003873 ORTHO05D004127 6.4e-12 75.1 80 55.0
Atru.BG.255.p Acer truncatum HOM05D003873 ORTHO05D004127 8.4e-12 74.7 50 66.0
C04p02110 Brassica napus HOM05D003873 ORTHO05D004127 8.4e-12 74.7 67 58.2
BolC4t21859H Brassica oleracea HOM05D003873 ORTHO05D004127 8.4e-12 74.7 67 58.2
Actinidia31621 Actinidia chinensis HOM05D003873 ORTHO05D004127 1.1e-11 74.3 82 53.7
Sp4g22920 Schrenkiella parvula HOM05D003873 ORTHO05D004127 1.1e-11 74.3 82 52.4
PSO210G0819 Papaver somniferum HOM05D000620 ORTHO05D000537 1.4e-11 73.9 65 56.9
CsaV3_5G010890 Cucumis sativus L. HOM05D003873 ORTHO05D004127 1.9e-11 73.6 81 49.4
Sed0001367 Sechium edule HOM05D003873 ORTHO05D004127 1.9e-11 73.6 77 51.9
SMO119G0134 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.9e-11 73.6 50 74.0
CBR_g23787 Chara braunii HOM05D003873 ORTHO05D004127 2.4e-11 73.2 50 72.0
AL4G38470 Arabidopsis lyrata HOM05D003873 ORTHO05D004127 4.2e-11 72.4 62 62.9
vmacro09968 Vaccinium macrocarpon HOM05D003873 ORTHO05D004127 4.2e-11 72.4 53 66.0
MELO3C020142.2 Cucumis melo HOM05D003873 ORTHO05D004127 5.4e-11 72.0 81 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2730 Anthoceros agrestis HOM05D003873 ORTHO05D004127 7.1e-11 71.6 50 74.0
Mapoly0093s0078 Marchantia polymorpha HOM05D003873 ORTHO05D004127 7.1e-11 71.6 64 62.5
Hma1.2p1_0292F.1_g115900 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 9.3e-11 71.2 53 66.0
SMO119G0485 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 2.1e-10 70.1 50 68.0
Cre07.g336850 Chlamydomonas reinhardtii HOM05D003873 ORTHO05D004127 2.7e-10 69.7 50 72.0
Hma1.2p1_0292F.1_g115890 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 3.5e-10 69.3 53 64.2
Carub.0004s2289 Capsella rubella HOM05D003873 ORTHO05D004127 6.0e-10 68.6 62 59.7
Atru.chr1.2930 Acer truncatum HOM05D003873 ORTHO05D004127 7.9e-10 68.2 54 63.0
Lsat_1_v5_gn_9_122981 Lactuca sativa HOM05D003873 ORTHO05D004127 7.9e-10 68.2 50 64.0
FAN10G0598 Fragaria x ananassa HOM05D003873 ORTHO05D004127 1.0e-09 67.8 74 50.0
Sp4g22930 Schrenkiella parvula HOM05D003873 ORTHO05D004127 1.8e-09 67.0 62 61.3
Aa31LG3G1520 Aethionema arabicum HOM05D003873 ORTHO05D004127 3.9e-09 65.9 94 45.7
PRCOL_00002258 Prasinoderma coloniale HOM05D003873 ORTHO05D004127 6.7e-09 65.1 48 68.8
Atru.chr3.3508 Acer truncatum HOM05D003873 ORTHO05D004127 1.9e-08 63.5 76 47.4
Atru.chr3.3515 Acer truncatum HOM05D003873 ORTHO05D004127 1.9e-08 63.5 76 47.4
Lj1C966G3 Lonicera japonica HOM05D003873 ORTHO05D004127 2.8e-07 59.7 47 66.0
SMO198G0073 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 6.2e-07 58.5 63 47.6
SMO170G0066 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.1e-06 57.8 67 46.3
SMO198G0098 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.4e-06 57.4 65 47.7
SMO147G0042 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.8e-06 57.0 61 47.5
SMO141G0106 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 6.9e-06 55.1 46 54.3


User provided reference genes

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