Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0129900 Oryza sativa ssp. japonica HOM05D007055 ORTHO05D008943 5.1e-69 264.6 166 100.0
Zm00001eb173230 Zea mays HOM05D007055 ORTHO05D008943 3.5e-30 135.6 105 71.4
PSO541G2194 Papaver somniferum HOM05D007055 ORTHO05D008943 4.3e-20 102.1 98 55.1
PSO675G8693 Papaver somniferum HOM05D007055 ORTHO05D008943 4.3e-20 102.1 98 55.1
MSTRG.22977 Avicennia marina HOM05D007055 ORTHO05D008943 1.3e-19 100.5 96 55.2
MBI18_g28200_MAGBIO Magnolia biondii HOM05D007055 ORTHO05D008943 2.2e-19 99.8 98 56.1
SalBow5G4782 Salvia bowleyana HOM05D000091 ORTHO05D003024 2.8e-19 99.4 93 57.0
Hund02291 Selenicereus undatus HOM05D007055 ORTHO05D008943 6.3e-19 98.2 101 51.5
ECA240G0655 Erigeron canadensis HOM05D007055 ORTHO05D008943 1.1e-18 97.4 97 50.5
CAN.G943.31 Capsicum annuum HOM05D007055 ORTHO05D008943 1.8e-18 96.7 92 55.4
Solyc07g066370.3 Solanum lycopersicum HOM05D007055 ORTHO05D008943 3.1e-18 95.9 99 50.5
Sopen07g034550 Solanum pennellii HOM05D007055 ORTHO05D008943 3.1e-18 95.9 99 50.5
Nn7g37868 Nelumbo nucifera HOM05D007055 ORTHO05D008943 6.9e-18 94.7 95 54.7
PGSC0003DMG400022130 Solanum tuberosum HOM05D007055 ORTHO05D008943 6.9e-18 94.7 97 50.5
Oeu002805.1 Olea europaea HOM05D007055 ORTHO05D008943 9.0e-18 94.4 92 53.3
arahy.Tifrunner.gnm1.ann1.FS1PG6 Arachis hypogaea HOM05D007055 ORTHO05D008943 1.2e-17 94.0 104 51.0
Migut.H02189 Erythranthe guttata HOM05D007055 ORTHO05D008943 1.5e-17 93.6 96 51.0
Glyma.15G254500 Glycine max HOM05D007055 ORTHO05D008943 1.5e-17 93.6 100 50.0
Psat1g002720 Pisum sativum HOM05D007055 ORTHO05D008943 1.5e-17 93.6 98 51.0
HPP92_002254 Vanilla planifolia HOM05D007055 ORTHO05D008943 1.5e-17 93.6 78 62.8
Gorai.009G077700 Gossypium raimondii HOM05D007055 ORTHO05D008943 2.0e-17 93.2 97 51.5
unitig_699.g19681 Utricularia gibba HOM05D007055 ORTHO05D008943 2.0e-17 93.2 96 52.1
Ca_03690_v3 Cicer arietinum L. HOM05D007055 ORTHO05D008943 3.4e-17 92.4 98 51.0
Glyma.08G173000 Glycine max HOM05D007055 ORTHO05D008943 3.4e-17 92.4 100 50.0
Phvul.005G056000 Phaseolus vulgaris HOM05D007055 ORTHO05D008943 3.4e-17 92.4 100 50.0
FAN21G0096 Fragaria x ananassa HOM05D007055 ORTHO05D008943 4.5e-17 92.0 104 46.2
Gohir.A05G073500 Gossypium hirsutum HOM05D007055 ORTHO05D008943 4.5e-17 92.0 98 50.0
Gohir.D05G076400 Gossypium hirsutum HOM05D007055 ORTHO05D008943 4.5e-17 92.0 98 50.0
Sed0014529 Sechium edule HOM05D007055 ORTHO05D008943 5.9e-17 91.7 99 49.5
GSVIVG01020441001 Vitis vinifera HOM05D007055 ORTHO05D008943 5.9e-17 91.7 91 52.7
arahy.Tifrunner.gnm1.ann1.4D1XNM Arachis hypogaea HOM05D007055 ORTHO05D008943 7.7e-17 91.3 105 50.5
FAN11G2295 Fragaria x ananassa HOM05D007055 ORTHO05D008943 7.7e-17 91.3 104 46.2
FAN21G3903 Fragaria x ananassa HOM05D007055 ORTHO05D008943 7.7e-17 91.3 104 46.2
Medtr2g069750 Medicago truncatula HOM05D007055 ORTHO05D008943 7.7e-17 91.3 95 52.6
PGR031G2131 Punica granatum HOM05D007055 ORTHO05D008943 7.7e-17 91.3 101 46.5
Sc03g0007920 Simmondsia chinensis HOM05D007055 ORTHO05D008943 7.7e-17 91.3 99 48.5
FvH4_3g16000 Fragaria vesca HOM05D007055 ORTHO05D008943 1.3e-16 90.5 97 49.5
CANSAT56G2639 Cannabis sativa HOM05D007055 ORTHO05D008943 1.7e-16 90.1 102 46.1
Aa31LG4G1920 Aethionema arabicum HOM05D007055 ORTHO05D008943 2.2e-16 89.7 99 48.5
HanXRQChr13g0408571 Helianthus annuus HOM05D007055 ORTHO05D008943 2.2e-16 89.7 97 46.4
Peaxi162Scf00232g01121 Petunia axillaris HOM05D007055 ORTHO05D008943 2.2e-16 89.7 97 49.5
SGA_v2.0_scaffold2G00966 Striga asiatica HOM05D007055 ORTHO05D008943 2.2e-16 89.7 96 50.0
TAR627G0757 Trochodendron aralioides HOM05D007055 ORTHO05D008943 2.2e-16 89.7 97 50.5
TWI38G0074 Tripterygium wilfordii HOM05D007055 ORTHO05D008943 2.9e-16 89.4 102 51.0
Actinidia07345 Actinidia chinensis HOM05D007055 ORTHO05D008943 3.8e-16 89.0 96 49.0
Aqoxy1G01599 Aquilegia oxysepala HOM05D007055 ORTHO05D008943 3.8e-16 89.0 106 45.3
Duzib168G0293 Durio zibethinus HOM05D007055 ORTHO05D008943 3.8e-16 89.0 97 49.5
Lj5A202T45 Lonicera japonica HOM05D007055 ORTHO05D008943 3.8e-16 89.0 103 44.7
ClCG11G016330 Citrullus lanatus HOM05D007055 ORTHO05D008943 5.0e-16 88.6 106 46.2
Rhsim06G0238300 Rhododendron simsii HOM05D007055 ORTHO05D008943 5.0e-16 88.6 96 47.9
DCAR_013747 Daucus carota HOM05D007055 ORTHO05D008943 6.5e-16 88.2 93 48.4
Thecc.09G245700 Theobroma cacao HOM05D007055 ORTHO05D008943 6.5e-16 88.2 98 49.0
Ciclev10022701m.g Citrus clementina HOM05D007055 ORTHO05D008943 8.5e-16 87.8 98 48.0
Atru.chr12.2186 Acer truncatum HOM05D007055 ORTHO05D008943 1.1e-15 87.4 99 46.5
MELO3C010559.2 Cucumis melo HOM05D007055 ORTHO05D008943 1.1e-15 87.4 96 49.0
FAN16G3461 Fragaria x ananassa HOM05D007055 ORTHO05D008943 1.1e-15 87.4 97 47.4
RcHm_v2.0_Chr5g0026941 Rosa chinensis HOM05D007055 ORTHO05D008943 1.1e-15 87.4 100 47.0
Lj3g0013500 Lotus japonicus HOM05D007055 ORTHO05D008943 1.4e-15 87.0 98 48.0
Cfa019436 Carpinus fangiana HOM05D007055 ORTHO05D008943 1.9e-15 86.7 104 45.2
CsaV3_4G031800 Cucumis sativus L. HOM05D007055 ORTHO05D008943 1.9e-15 86.7 96 49.0
Sabra11G0128800 Salix brachista HOM05D007055 ORTHO05D008943 1.9e-15 86.7 101 46.5
Hma1.2p1_0151F.1_g066890 Hydrangea macrophylla HOM05D007055 ORTHO05D008943 2.5e-15 86.3 92 48.9
AT1G79070 Arabidopsis thaliana HOM05D007055 ORTHO05D008943 3.2e-15 85.9 98 45.9
CSS0027098 Camellia sinensis var. sinensis HOM05D007055 ORTHO05D008943 3.2e-15 85.9 97 46.4
Potri.011G144400 Populus trichocarpa HOM05D007055 ORTHO05D008943 3.2e-15 85.9 96 47.9
Lalb_Chr25g0285111 Lupinus albus HOM05D007055 ORTHO05D008943 4.2e-15 85.5 98 46.9
CARHR072740 Cardamine hirsuta HOM05D007055 ORTHO05D008943 5.5e-15 85.1 98 46.9
COL.COLO4_07385 Corchorus olitorius HOM05D007055 ORTHO05D008943 5.5e-15 85.1 102 46.1
ATR1098G113 Amborella trichopoda HOM05D007055 ORTHO05D008943 7.2e-15 84.7 101 46.5
Carub.0002s2594 Capsella rubella HOM05D007055 ORTHO05D008943 7.2e-15 84.7 106 44.3
Lsat_1_v5_gn_7_72120 Lactuca sativa HOM05D007055 ORTHO05D008943 7.2e-15 84.7 98 42.9
Manes.06G171200 Manihot esculenta HOM05D007055 ORTHO05D008943 7.2e-15 84.7 93 50.5
EL10Ac4g08563 Beta vulgaris HOM05D007055 ORTHO05D008943 9.4e-15 84.3 100 46.0
Duzib150G0143 Durio zibethinus HOM05D007055 ORTHO05D008943 9.4e-15 84.3 93 48.4
Thhalv10019307m.g Eutrema salsugineum HOM05D007055 ORTHO05D008943 9.4e-15 84.3 101 43.6
Sp5g34120 Schrenkiella parvula HOM05D007055 ORTHO05D008943 9.4e-15 84.3 106 47.2
Potri.008G043200 Populus trichocarpa HOM05D007055 ORTHO05D008943 1.6e-14 83.6 99 45.5
THA.LOC104808116 Tarenaya hassleriana HOM05D007055 ORTHO05D008943 1.6e-14 83.6 98 48.0
AL2G39530 Arabidopsis lyrata HOM05D007055 ORTHO05D008943 2.1e-14 83.2 98 44.9
BcaC08g47470 Brassica carinata HOM05D007055 ORTHO05D008943 2.7e-14 82.8 98 45.9
BcaB02g08664 Brassica carinata HOM05D007055 ORTHO05D008943 6.1e-14 81.6 98 42.9
BolC6t40312H Brassica oleracea HOM05D007055 ORTHO05D008943 6.1e-14 81.6 98 44.9
Manes.06G170400 Manihot esculenta HOM05D007055 ORTHO05D008943 6.1e-14 81.6 93 49.5
Ah.06g187070 Amaranthus hybridus HOM05D007055 ORTHO05D008943 1.4e-13 80.5 100 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2782 Anthoceros agrestis HOM05D007055 ORTHO05D008943 1.4e-13 80.5 91 47.3
C06p52940 Brassica napus HOM05D007055 ORTHO05D008943 1.4e-13 80.5 91 47.3
MD05G1216100 Malus domestica HOM05D007055 ORTHO05D008943 1.8e-13 80.1 94 47.9
Nitab4.5_0001749g0090 Nicotiana tabacum HOM05D007055 ORTHO05D008943 1.8e-13 80.1 122 41.0
A07p44210 Brassica napus HOM05D007055 ORTHO05D008943 2.3e-13 79.7 98 43.9
Eucgr.F03184 Eucalyptus grandis HOM05D007055 ORTHO05D008943 2.3e-13 79.7 92 46.7
CiPaw.12G045200 Carya illinoinensis HOM05D007055 ORTHO05D008943 3.0e-13 79.3 98 43.9
AUR62044625 Chenopodium quinoa HOM05D007055 ORTHO05D008943 3.0e-13 79.3 79 51.9
BraA07t31929Z Brassica rapa HOM05D007055 ORTHO05D008943 5.1e-13 78.6 91 46.2
BcaNung04909 Brassica carinata HOM05D007055 ORTHO05D008943 8.8e-13 77.8 90 45.6
Cc05_g15950 Coffea canephora HOM05D007055 ORTHO05D008943 4.3e-12 75.5 90 46.7
TPR.G9749 Trifolium pratense HOM05D007055 ORTHO05D008943 1.7e-11 73.6 71 57.7
Manes.06G171100 Manihot esculenta HOM05D007055 ORTHO05D008943 3.7e-11 72.4 87 48.3
SalBow5G1530 Salvia bowleyana HOM05D000091 ORTHO05D003024 1.1e-10 70.9 68 55.9
SHI01886 Sapria himalayana HOM05D007055 ORTHO05D008943 1.4e-10 70.5 94 42.6
vmacro11656 Vaccinium macrocarpon HOM05D007055 ORTHO05D008943 2.4e-10 69.7 53 64.2
Manes.06G170801 Manihot esculenta HOM05D007055 ORTHO05D008943 3.1e-10 69.3 99 45.5
Prupe.4G143100 Prunus persica HOM05D007055 ORTHO05D008943 3.1e-10 69.3 97 41.2
Pp3c15_3290 Physcomitrium patens HOM05D007055 ORTHO05D008943 5.3e-10 68.6 91 41.8
Manes.06G169900 Manihot esculenta HOM05D007055 ORTHO05D008943 9.1e-10 67.8 91 45.1
CBR_g41533 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-09 67.4 99 40.4
CDE12G0729 Ceratophyllum demersum HOM05D007055 ORTHO05D008943 3.4e-09 65.9 96 37.5
Manes.06G170100 Manihot esculenta HOM05D007055 ORTHO05D008943 1.7e-08 63.5 90 38.9
AUR62043058 Chenopodium quinoa HOM05D007055 ORTHO05D008943 6.5e-08 61.6 129 36.4
Nitab4.5_0007742g0030 Nicotiana tabacum HOM05D007055 ORTHO05D008943 1.4e-07 60.5 61 52.5
BcaC08g45387 Brassica carinata HOM05D007055 ORTHO05D008943 1.9e-07 60.1 93 40.9
Mapoly0112s0058 Marchantia polymorpha HOM05D007055 ORTHO05D008943 2.5e-07 59.7 102 37.3
SMO367G1177 Selaginella moellendorffii HOM05D007055 ORTHO05D008943 2.1e-06 56.6 80 41.2


User provided reference genes

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