Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 7.7e-55 216.9 106 100.0
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 8.8e-43 176.8 101 87.1
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 9.2e-32 140.2 99 68.7
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 2.4e-16 89.0 94 48.9
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 4.6e-15 84.7 94 45.7
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 6.0e-15 84.3 92 46.7
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 1.0e-14 83.6 99 43.4
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.0e-14 83.6 94 43.6
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 1.0e-14 83.6 94 46.8
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.3e-14 83.2 94 42.6
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 2.3e-14 82.4 92 46.7
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 3.0e-14 82.0 97 39.2
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 3.9e-14 81.6 94 46.8
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 3.9e-14 81.6 94 45.7
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 5.1e-14 81.3 95 40.0
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 5.1e-14 81.3 95 40.0
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 5.1e-14 81.3 98 42.9
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 1.1e-13 80.1 94 44.7
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 1.1e-13 80.1 94 46.8
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 1.1e-13 80.1 94 44.7
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 1.1e-13 80.1 94 43.6
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.1e-13 80.1 94 42.6
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 2.5e-13 79.0 94 42.6
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 2.5e-13 79.0 99 39.4
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.5e-13 79.0 94 44.7
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 3.3e-13 78.6 94 43.6
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 3.3e-13 78.6 97 43.3
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 4.3e-13 78.2 94 43.6
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 4.3e-13 78.2 94 43.6
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 4.3e-13 78.2 94 43.6
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 4.3e-13 78.2 94 43.6
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 4.3e-13 78.2 93 46.2
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 5.6e-13 77.8 94 41.5
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 7.3e-13 77.4 94 43.6
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 9.5e-13 77.0 94 42.6
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 2.1e-12 75.9 94 40.4
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 2.8e-12 75.5 94 40.4
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 2.8e-12 75.5 99 37.4
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 3.6e-12 75.1 99 40.4
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 3.6e-12 75.1 109 40.4
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.6e-12 75.1 109 40.4
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 3.6e-12 75.1 94 43.6
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 3.6e-12 75.1 94 43.6
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 6.2e-12 74.3 94 42.6
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 6.2e-12 74.3 93 44.1
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 6.2e-12 74.3 109 39.4
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 8.1e-12 73.9 95 42.1
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 8.1e-12 73.9 95 38.9
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 1.1e-11 73.6 94 40.4
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.1e-11 73.6 109 38.5
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 1.4e-11 73.2 94 44.7
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 1.4e-11 73.2 94 40.4
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 1.4e-11 73.2 94 41.5
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 1.4e-11 73.2 99 36.4
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 1.8e-11 72.8 96 40.6
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 1.8e-11 72.8 94 43.6
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.8e-11 72.8 109 38.5
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 1.8e-11 72.8 94 39.4
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 2.3e-11 72.4 94 37.2
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.3e-11 72.4 110 38.2
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 2.3e-11 72.4 94 42.6
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 3.1e-11 72.0 94 38.3
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 5.2e-11 71.2 94 43.6
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 6.8e-11 70.9 94 37.2
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 6.8e-11 70.9 94 37.2
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 6.8e-11 70.9 94 40.4
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 1.2e-10 70.1 94 36.2
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.5e-10 69.7 107 38.3
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 1.5e-10 69.7 94 40.4
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 2.0e-10 69.3 92 39.1
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 2.0e-10 69.3 94 39.4
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 4.4e-10 68.2 94 37.2
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 4.4e-10 68.2 94 40.4
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 4.4e-10 68.2 95 40.0
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 1.3e-09 66.6 116 35.3
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.3e-09 66.6 89 41.6
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 1.3e-09 66.6 93 39.8
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 1.7e-09 66.2 94 39.4
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 1.7e-09 66.2 93 36.6
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 2.9e-09 65.5 86 40.7
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 4.9e-09 64.7 94 34.0
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 1.4e-08 63.2 86 39.5
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 4.1e-08 61.6 94 35.1
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 9.2e-08 60.5 94 36.2
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.6e-07 59.7 94 34.0
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.6e-07 59.7 94 34.0
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 2.1e-07 59.3 86 40.7
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 3.5e-07 58.5 94 34.0
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 7.8e-07 57.4 90 38.9


User provided reference genes

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