Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.8e-57 225.7 117 100.0
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.0e-44 183.3 102 91.2
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.2e-38 160.6 114 79.8
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 9.5e-38 160.2 107 75.7
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.2e-32 143.3 102 72.5
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.0e-32 142.5 102 68.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 3.5e-32 141.7 97 74.2
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 4.5e-32 141.4 102 67.6
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.5e-32 141.4 102 67.6
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.5e-32 141.4 102 67.6
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.5e-32 141.4 102 67.6
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 4.5e-32 141.4 102 67.6
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 4.5e-32 141.4 102 71.6
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 5.9e-32 141.0 106 70.8
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.7e-31 139.4 101 67.3
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 2.3e-31 139.0 100 72.0
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 2.3e-31 139.0 103 70.9
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 2.3e-31 139.0 101 67.3
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 2.9e-31 138.7 101 66.3
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 3.8e-31 138.3 97 72.2
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 5.0e-31 137.9 105 67.6
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 5.0e-31 137.9 104 68.3
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 6.6e-31 137.5 104 64.4
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 6.6e-31 137.5 99 69.7
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 8.6e-31 137.1 104 64.4
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 8.6e-31 137.1 101 70.3
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 8.6e-31 137.1 104 64.4
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 8.6e-31 137.1 106 67.9
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-30 136.7 104 67.3
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.1e-30 136.7 104 64.4
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.1e-30 136.7 104 65.4
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.9e-30 136.0 104 67.3
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.9e-30 136.0 111 65.8
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.9e-30 136.0 97 68.0
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.9e-30 136.0 102 67.6
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.5e-30 135.6 104 66.3
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 2.5e-30 135.6 103 66.0
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 2.5e-30 135.6 104 66.3
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 3.3e-30 135.2 105 65.7
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.3e-30 135.2 104 64.4
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 4.3e-30 134.8 105 64.8
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 4.3e-30 134.8 101 65.3
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 4.3e-30 134.8 104 67.3
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 5.6e-30 134.4 101 67.3
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 5.6e-30 134.4 101 68.3
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.6e-30 134.4 104 66.3
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.6e-30 134.4 104 66.3
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 5.6e-30 134.4 103 65.0
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 5.6e-30 134.4 103 66.0
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 5.6e-30 134.4 103 64.1
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 7.3e-30 134.0 104 65.4
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.3e-30 134.0 103 66.0
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 7.3e-30 134.0 102 65.7
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 7.3e-30 134.0 102 65.7
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 7.3e-30 134.0 105 64.8
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 9.5e-30 133.7 103 66.0
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.2e-29 133.3 103 67.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.2e-29 133.3 104 63.5
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.6e-29 132.9 109 64.2
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.6e-29 132.9 109 64.2
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.6e-29 132.9 99 68.7
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.6e-29 132.9 99 69.7
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.6e-29 132.9 104 67.3
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 2.1e-29 132.5 102 64.7
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 2.1e-29 132.5 102 64.7
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 2.1e-29 132.5 104 64.4
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.1e-29 132.5 103 66.0
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.1e-29 132.5 103 68.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.8e-29 132.1 103 65.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 2.8e-29 132.1 103 63.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 3.6e-29 131.7 97 69.1
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 3.6e-29 131.7 103 65.0
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 3.6e-29 131.7 103 65.0
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 4.7e-29 131.3 99 65.7
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 4.7e-29 131.3 105 64.8
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 4.7e-29 131.3 106 65.1
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 4.7e-29 131.3 105 64.8
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 4.7e-29 131.3 104 66.3
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.7e-29 131.3 103 64.1
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 6.1e-29 131.0 102 65.7
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 6.1e-29 131.0 101 65.3
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 6.1e-29 131.0 103 63.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 6.1e-29 131.0 99 66.7
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 8.0e-29 130.6 110 62.7
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.0e-29 130.6 97 69.1
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 8.0e-29 130.6 102 65.7
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 8.0e-29 130.6 106 63.2
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 1.0e-28 130.2 103 65.0
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.4e-28 129.8 105 65.7
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.4e-28 129.8 105 65.7
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.4e-28 129.8 105 65.7
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.4e-28 129.8 105 65.7
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.4e-28 129.8 102 65.7
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.4e-28 129.8 106 62.3
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.8e-28 129.4 103 64.1
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 2.3e-28 129.0 102 64.7
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 2.3e-28 129.0 104 64.4
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.3e-28 129.0 100 65.0
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.3e-28 129.0 103 64.1
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 2.3e-28 129.0 105 64.8
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 3.0e-28 128.6 103 66.0
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 3.0e-28 128.6 101 67.3
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 3.0e-28 128.6 102 60.8
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 3.0e-28 128.6 97 66.0
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.0e-28 128.6 106 64.2
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.0e-28 128.3 99 64.6
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 5.2e-28 127.9 105 63.8
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 5.2e-28 127.9 103 65.0
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 8.9e-28 127.1 103 65.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 8.9e-28 127.1 103 65.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.9e-28 127.1 97 67.0
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.9e-28 127.1 99 64.6
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.9e-28 127.1 99 64.6
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.5e-27 126.3 106 62.3
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.5e-27 126.3 106 61.3
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.5e-27 126.3 97 64.9
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.0e-27 125.9 102 64.7
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 2.0e-27 125.9 105 61.9
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.6e-27 125.6 106 63.2
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 2.6e-27 125.6 105 60.0
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 3.4e-27 125.2 103 62.1
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 3.4e-27 125.2 96 66.7
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 3.4e-27 125.2 103 62.1
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 3.4e-27 125.2 103 63.1
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 4.4e-27 124.8 103 61.2
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 5.8e-27 124.4 101 63.4
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 5.8e-27 124.4 102 60.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 7.5e-27 124.0 104 64.4
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 2.9e-26 122.1 103 63.1
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.9e-26 122.1 97 61.9
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 6.4e-26 120.9 103 62.1
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.4e-25 119.8 99 62.6
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 3.5e-24 115.2 97 59.8
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 3.5e-24 115.2 97 59.8
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.7e-23 112.8 80 70.0
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.9e-22 109.4 100 59.0
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.3e-22 108.6 94 60.6
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 3.3e-22 108.6 103 54.4
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 4.3e-22 108.2 100 59.0
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-20 103.6 89 62.9
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.3e-20 102.4 103 55.3
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 8.9e-20 100.5 87 58.6
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 4.4e-19 98.2 91 58.2
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.7e-18 96.3 91 56.0
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 4.9e-18 94.7 89 57.3
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.1e-17 93.6 103 51.5
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.6e-16 89.7 65 69.2
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.6e-16 89.7 74 64.9
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.6e-16 89.7 92 58.7
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 5.1e-15 84.7 55 74.5
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.8e-12 76.3 66 57.6
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.6e-11 72.4 94 46.8
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.7e-10 68.6 78 50.0
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.9e-09 66.2 102 40.2
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.9e-09 66.2 89 44.9
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.6e-08 63.2 90 44.4
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 6.0e-08 61.2 50 60.0
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 3.9e-07 58.5 49 63.3
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.9e-06 56.2 46 60.9
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.5e-06 55.8 50 60.0


User provided reference genes

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