Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0689950 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 0.0e+00 1838.5 1006 100.0
Zm00001eb331400 Zea mays HOM05D004995 ORTHO05D006034 2.7e-149 533.9 1056 38.6
Os03g0304400 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 1.2e-83 315.8 1100 31.6
Zm00001eb014460 Zea mays HOM05D004995 ORTHO05D006034 1.4e-60 239.2 1125 27.7
Lalb_Chr02g0146751 Lupinus albus HOM05D004995 ORTHO05D006034 1.4e-33 149.4 1057 24.6
Sopen06g004320 Solanum pennellii HOM05D004995 ORTHO05D006034 3.2e-33 148.3 1056 25.1
Manes.01G226600 Manihot esculenta HOM05D004995 ORTHO05D006034 3.5e-32 144.8 1022 25.7
Solyc06g009680.4 Solanum lycopersicum HOM05D004995 ORTHO05D006034 7.9e-32 143.7 1027 25.2
Nn3g21651 Nelumbo nucifera HOM05D004995 ORTHO05D006034 5.1e-31 141.0 1045 24.8
Glyma.10G014100 Glycine max HOM05D004995 ORTHO05D006034 1.6e-29 136.0 1039 24.3
PSO170G6821 Papaver somniferum HOM05D004995 ORTHO05D006034 3.7e-29 134.8 1178 24.4
Zm00001eb075350 Zea mays HOM05D004995 ORTHO05D006034 3.7e-29 134.8 181 47.5
Phvul.007G215300 Phaseolus vulgaris HOM05D004995 ORTHO05D006034 4.8e-29 134.4 1097 24.5
BraA03t12302Z Brassica rapa HOM05D004995 ORTHO05D006034 8.2e-29 133.7 1037 24.9
Nitab4.5_0006144g0040 Nicotiana tabacum HOM05D004995 ORTHO05D006034 1.5e-27 129.4 1088 24.2
Ciclev10024590m.g Citrus clementina HOM05D004995 ORTHO05D006034 2.0e-27 129.0 1073 24.1
Glyma.02G013500 Glycine max HOM05D004995 ORTHO05D006034 3.4e-27 128.3 1050 23.2
CSS0012776 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 1.3e-26 126.3 1025 24.4
CSS0035665 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 2.2e-26 125.6 1025 24.3
Ca_10292_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 6.5e-26 124.0 1034 23.9
Ca_30263_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 6.5e-26 124.0 1034 23.9
CARHR250290 Cardamine hirsuta HOM05D004995 ORTHO05D006034 1.1e-25 123.2 1098 23.5
Cpa.g.sc18.23 Carica papaya HOM05D004995 ORTHO05D006034 1.1e-25 123.2 1024 23.4
CAN.G1280.22 Capsicum annuum HOM05D004995 ORTHO05D006034 1.4e-25 122.9 1029 24.5
Dinv33107 Davidia involucrata HOM05D004995 ORTHO05D006034 1.9e-25 122.5 1051 24.2
Carub.0006s3511 Capsella rubella HOM05D004995 ORTHO05D006034 3.2e-25 121.7 1135 22.7
Oeu047387.1 Olea europaea HOM05D004995 ORTHO05D006034 3.2e-25 121.7 1117 22.6
TAR633G0044 Trochodendron aralioides HOM05D004995 ORTHO05D006034 1.2e-24 119.8 1034 24.2
HPP92_002051 Vanilla planifolia HOM05D004995 ORTHO05D006034 2.1e-24 119.0 94 60.6
DCAR_012367 Daucus carota HOM05D004995 ORTHO05D006034 6.0e-24 117.5 1030 25.0
Nitab4.5_0000363g0330 Nicotiana tabacum HOM05D004995 ORTHO05D006034 6.0e-24 117.5 1088 24.4
Medtr1g087290 Medicago truncatula HOM05D004995 ORTHO05D006034 1.0e-23 116.7 1026 23.1
Lj5g0006877 Lotus japonicus HOM05D004995 ORTHO05D006034 1.3e-23 116.3 1030 25.0
AT4G02110 Arabidopsis thaliana HOM05D004995 ORTHO05D006034 2.3e-23 115.5 1094 22.8
COL.COLO4_23251 Corchorus olitorius HOM05D004995 ORTHO05D006034 3.0e-23 115.2 1028 27.1
Rhsim01G0290000 Rhododendron simsii HOM05D004995 ORTHO05D006034 3.9e-23 114.8 1037 24.2
Aqoxy5G04290 Aquilegia oxysepala HOM05D004995 ORTHO05D006034 6.7e-23 114.0 1057 22.6
MD03G1296700 Malus domestica HOM05D004995 ORTHO05D006034 6.7e-23 114.0 1043 23.2
PSO357G0286 Papaver somniferum HOM05D004995 ORTHO05D006034 1.1e-22 113.2 1218 23.7
BcaB01g02426 Brassica carinata HOM05D004995 ORTHO05D006034 1.5e-22 112.8 1102 24.4
PGSC0003DMG400009006 Solanum tuberosum HOM05D004995 ORTHO05D006034 1.5e-22 112.8 1032 23.7
THA.LOC104825943 Tarenaya hassleriana HOM05D004995 ORTHO05D006034 2.5e-22 112.1 1053 24.5
VMungo0720G1458 Vigna mungo HOM05D004995 ORTHO05D006034 4.3e-22 111.3 1064 24.7
Thecc.01G311300 Theobroma cacao HOM05D004995 ORTHO05D006034 5.7e-22 110.9 105 54.3
CAN.G362.42 Capsicum annuum HOM05D004995 ORTHO05D006034 7.4e-22 110.5 1058 23.4
TWI75G0138 Tripterygium wilfordii HOM05D004995 ORTHO05D006034 7.4e-22 110.5 1024 23.6
BolC3t16092H Brassica oleracea HOM05D004995 ORTHO05D006034 9.7e-22 110.2 1033 22.6
AL6G51110 Arabidopsis lyrata HOM05D004995 ORTHO05D006034 1.3e-21 109.8 1106 22.8
CiPaw.07G116000 Carya illinoinensis HOM05D004995 ORTHO05D006034 1.6e-21 109.4 1036 23.9
Oeu008461.1 Olea europaea HOM05D004995 ORTHO05D006034 1.6e-21 109.4 1031 23.5
Sabra02G0160100 Salix brachista HOM05D004995 ORTHO05D006034 1.6e-21 109.4 1014 23.2
BcaC01g06775 Brassica carinata HOM05D004995 ORTHO05D006034 3.7e-21 108.2 1055 22.8
FAN04G1561 Fragaria x ananassa HOM05D004995 ORTHO05D006034 6.3e-21 107.5 1075 24.1
Ah.11g049350 Amaranthus hybridus HOM05D004995 ORTHO05D006034 1.1e-20 106.7 1106 23.0
arahy.Tifrunner.gnm1.ann1.KJ11SU Arachis hypogaea HOM05D004995 ORTHO05D006034 1.4e-20 106.3 1031 23.6
A03p31220 Brassica napus HOM05D004995 ORTHO05D006034 1.4e-20 106.3 1041 23.1
Lsat_1_v5_gn_8_165441 Lactuca sativa HOM05D004995 ORTHO05D006034 1.4e-20 106.3 90 60.0
Potri.002G197400 Populus trichocarpa HOM05D004995 ORTHO05D006034 1.8e-20 105.9 1028 23.4
QL12p020317 Quercus lobata HOM05D004995 ORTHO05D006034 2.4e-20 105.5 1045 22.3
TPR.G19766 Trifolium pratense HOM05D004995 ORTHO05D006034 2.4e-20 105.5 1031 22.9
vmacro15117 Vaccinium macrocarpon HOM05D004995 ORTHO05D006034 2.4e-20 105.5 125 49.6
arahy.Tifrunner.gnm1.ann1.SI6M6S Arachis hypogaea HOM05D004995 ORTHO05D006034 3.1e-20 105.1 1045 23.0
C03p38070 Brassica napus HOM05D004995 ORTHO05D006034 3.1e-20 105.1 1043 21.9
Cc02_g27310 Coffea canephora HOM05D004995 ORTHO05D006034 3.1e-20 105.1 1039 23.9
Thhalv10028365m.g Eutrema salsugineum HOM05D004995 ORTHO05D006034 4.1e-20 104.8 1117 23.2
FAN18G1671 Fragaria x ananassa HOM05D004995 ORTHO05D006034 5.3e-20 104.4 1080 23.1
Potri.014G122400 Populus trichocarpa HOM05D004995 ORTHO05D006034 5.3e-20 104.4 1034 23.8
FvH4_5g39450 Fragaria vesca HOM05D004995 ORTHO05D006034 1.5e-19 102.8 1059 23.3
PGR044G2031 Punica granatum HOM05D004995 ORTHO05D006034 2.0e-19 102.4 1052 22.7
Sp6g02000 Schrenkiella parvula HOM05D004995 ORTHO05D006034 3.4e-19 101.7 1130 22.5
Cfa005817 Carpinus fangiana HOM05D004995 ORTHO05D006034 4.5e-19 101.3 1035 22.9
Haze_05025 Corylus avellana HOM05D004995 ORTHO05D006034 4.5e-19 101.3 1038 23.0
MELO3C015934.2 Cucumis melo HOM05D004995 ORTHO05D006034 5.9e-19 100.9 1043 21.7
Dinv10081 Davidia involucrata HOM05D004995 ORTHO05D006034 5.9e-19 100.9 1017 22.4
Peaxi162Scf00058g03010 Petunia axillaris HOM05D004995 ORTHO05D006034 5.9e-19 100.9 1038 23.9
RcHm_v2.0_Chr7g0241761 Rosa chinensis HOM05D004995 ORTHO05D006034 5.9e-19 100.9 1073 23.1
Hund09619 Selenicereus undatus HOM05D004995 ORTHO05D006034 7.6e-19 100.5 1113 23.8
Duzib138G1673 Durio zibethinus HOM05D004995 ORTHO05D006034 1.7e-18 99.4 1036 24.9
HanXRQChr15g0464181 Helianthus annuus HOM05D004995 ORTHO05D006034 1.7e-18 99.4 1139 24.0
Nitab4.5_0013957g0010 Nicotiana tabacum HOM05D004995 ORTHO05D006034 2.2e-18 99.0 1019 24.1
Actinidia21007 Actinidia chinensis HOM05D004995 ORTHO05D006034 3.8e-18 98.2 1037 23.3
Actinidia25841 Actinidia chinensis HOM05D004995 ORTHO05D006034 3.8e-18 98.2 1053 23.1
GSVIVG01028102001 Vitis vinifera HOM05D004995 ORTHO05D006034 5.0e-18 97.8 127 44.9
EL10As5g23507 Beta vulgaris HOM05D004995 ORTHO05D006034 8.5e-18 97.1 1144 24.8
Prupe.8G270500 Prunus persica HOM05D004995 ORTHO05D006034 8.5e-18 97.1 1033 22.9
CsaV3_7G029870 Cucumis sativus L. HOM05D004995 ORTHO05D006034 2.5e-17 95.5 1086 21.7
AagrBONN_evm.TU.Sc2ySwM_368.2357 Anthoceros agrestis HOM05D004995 ORTHO05D006034 5.5e-17 94.4 237 32.5
FAN08G3258 Fragaria x ananassa HOM05D004995 ORTHO05D006034 7.2e-17 94.0 1089 22.5
FAN13G2181 Fragaria x ananassa HOM05D004995 ORTHO05D006034 7.2e-17 94.0 1068 23.2
Haze_05021 Corylus avellana HOM05D004995 ORTHO05D006034 9.3e-17 93.6 1036 23.2
Sc24g0003210 Simmondsia chinensis HOM05D004995 ORTHO05D006034 1.6e-16 92.8 1022 24.9
Atru.chr5.1036 Acer truncatum HOM05D004995 ORTHO05D006034 2.1e-16 92.4 1093 23.7
Psat6g162360 Pisum sativum HOM05D004995 ORTHO05D006034 2.1e-16 92.4 1067 21.9
Aa31LG5G1780 Aethionema arabicum HOM05D004995 ORTHO05D006034 2.7e-16 92.0 1135 21.7
MD11G1316200 Malus domestica HOM05D004995 ORTHO05D006034 4.6e-16 91.3 121 44.6
Gohir.D12G129700 Gossypium hirsutum HOM05D004995 ORTHO05D006034 6.1e-16 90.9 1047 24.0
CDE09G0507 Ceratophyllum demersum HOM05D004995 ORTHO05D006034 1.3e-15 89.7 146 39.7
SHI20083 Sapria himalayana HOM05D004995 ORTHO05D006034 1.3e-15 89.7 119 47.9
SMO367G0571 Selaginella moellendorffii HOM05D004995 ORTHO05D006034 1.3e-15 89.7 90 46.7
Lj1A19G23 Lonicera japonica HOM05D004995 ORTHO05D006034 1.8e-15 89.4 198 33.3
CANSAT25G2589 Cannabis sativa HOM05D004995 ORTHO05D006034 2.3e-15 89.0 1064 23.5
Gohir.A12G126200 Gossypium hirsutum HOM05D004995 ORTHO05D006034 2.3e-15 89.0 1035 23.3
Gorai.008G140900 Gossypium raimondii HOM05D004995 ORTHO05D006034 2.3e-15 89.0 1056 23.9
Peaxi162Scf00001g10213 Petunia axillaris HOM05D004995 ORTHO05D006034 3.9e-15 88.2 1064 23.1
AUR62011830 Chenopodium quinoa HOM05D004995 ORTHO05D006034 6.7e-15 87.4 1205 23.4
HanXRQChr06g0167831 Helianthus annuus HOM05D004995 ORTHO05D006034 6.7e-15 87.4 585 25.3
SEGI_38340 Sequoiadendron giganteum HOM05D004995 ORTHO05D006034 6.7e-15 87.4 75 54.7
ATR0706G147 Amborella trichopoda HOM05D004995 ORTHO05D006034 1.1e-14 86.7 1022 21.5
MBI18_g28452_MAGBIO Magnolia biondii HOM05D004995 ORTHO05D006034 4.3e-14 84.7 1041 23.3
SGA_v2.0_scaffold376G50269 Striga asiatica HOM05D004995 ORTHO05D006034 7.4e-14 84.0 1028 25.9
AUR62024673 Chenopodium quinoa HOM05D004995 ORTHO05D006034 1.3e-13 83.2 1217 22.6
unitig_90.g27435 Utricularia gibba HOM05D004995 ORTHO05D006034 1.3e-13 83.2 1047 22.3
Zm00001eb176990 Zea mays HOM05D004995 ORTHO05D006034 2.2e-13 82.4 100 47.0
DCAR_005771 Daucus carota HOM05D004995 ORTHO05D006034 3.7e-13 81.6 1058 22.5
ECA236G3500 Erigeron canadensis HOM05D004995 ORTHO05D006034 4.8e-13 81.3 1071 22.4
Nitab4.5_0001301g0150 Nicotiana tabacum HOM05D004995 ORTHO05D006034 6.9e-12 77.4 422 27.0
Sabra14G0090800 Salix brachista HOM05D004995 ORTHO05D006034 1.5e-11 76.3 1055 24.2
CARHR293070 Cardamine hirsuta HOM05D004995 ORTHO05D006034 3.4e-11 75.1 70 54.3
Sed0026389 Sechium edule HOM05D004995 ORTHO05D006034 3.8e-10 71.6 1030 21.6
MD11G1316300 Malus domestica HOM05D004995 ORTHO05D006034 2.1e-08 65.9 74 48.6
Lj2g0010226 Lotus japonicus HOM05D006790 ORTHO05D007715 1.8e-07 62.8 58 48.3
Ah.09g229220 Amaranthus hybridus HOM05D006790 ORTHO05D007715 2.3e-07 62.4 58 48.3
Mapoly0010s0152 Marchantia polymorpha HOM05D004995 ORTHO05D006034 3.0e-07 62.0 1048 20.9
EL10Ac2g04125 Beta vulgaris HOM05D006790 ORTHO05D007715 6.7e-07 60.8 76 44.7
Lalb_Chr02g0158421 Lupinus albus HOM05D006790 ORTHO05D007715 8.8e-07 60.5 75 37.3
CDE10G1039 Ceratophyllum demersum HOM05D006790 ORTHO05D007715 1.5e-06 59.7 67 43.3
Sc23g0006450 Simmondsia chinensis HOM05D006790 ORTHO05D007715 1.5e-06 59.7 76 40.8
Aa31LG2G3550 Aethionema arabicum HOM05D006790 ORTHO05D007715 2.0e-06 59.3 58 48.3
GSVIVG01036474001 Vitis vinifera HOM05D006790 ORTHO05D007715 2.0e-06 59.3 58 48.3
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 2.6e-06 58.9 58 41.4
Phvul.004G048500 Phaseolus vulgaris HOM05D006790 ORTHO05D007715 2.6e-06 58.9 58 44.8
VMungo0464G1394 Vigna mungo HOM05D006790 ORTHO05D007715 2.6e-06 58.9 58 44.8
Manes.01G107100 Manihot esculenta HOM05D006790 ORTHO05D007715 3.3e-06 58.5 59 47.5
MCO11G651 Micromonas commoda HOM05D004995 ORTHO05D007715 3.3e-06 58.5 80 40.0
SMO141G0131 Selaginella moellendorffii HOM05D006790 ORTHO05D007715 3.3e-06 58.5 58 46.6
CANSAT64G1240 Cannabis sativa HOM05D006790 ORTHO05D007715 4.4e-06 58.2 58 46.6
Lj2g0000339 Lotus japonicus HOM05D006790 ORTHO05D007715 4.4e-06 58.2 57 45.6
Ciclev10011421m.g Citrus clementina HOM05D006790 ORTHO05D007715 5.7e-06 57.8 75 46.7
Lalb_Chr21g0318021 Lupinus albus HOM05D006790 ORTHO05D007715 5.7e-06 57.8 76 35.5
arahy.Tifrunner.gnm1.ann1.9J9R5Y Arachis hypogaea HOM05D006790 ORTHO05D007715 7.4e-06 57.4 58 41.4
Cc07_g04880 Coffea canephora HOM05D006790 ORTHO05D007715 7.4e-06 57.4 51 47.1
Nitab4.5_0001324g0030 Nicotiana tabacum HOM05D006790 ORTHO05D007715 7.4e-06 57.4 58 39.7
THA.LOC104822671 Tarenaya hassleriana HOM05D006790 ORTHO05D007715 7.4e-06 57.4 64 40.6
FvH4_6g45660 Fragaria vesca HOM05D006790 ORTHO05D007715 9.7e-06 57.0 58 46.6
Glyma.19G042100 Glycine max HOM05D006790 ORTHO05D007715 9.7e-06 57.0 58 43.1
Psat1g062760 Pisum sativum HOM05D006790 ORTHO05D007715 9.7e-06 57.0 58 41.4


User provided reference genes

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