Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 9.4e-197 689.9 322 100.0
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 5.8e-170 600.9 319 85.6
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 3.9e-142 508.4 321 69.2
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 6.6e-142 507.7 318 68.2
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 2.5e-141 505.8 320 67.2
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 6.2e-140 501.1 321 67.3
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 8.1e-140 500.7 320 67.8
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.1e-139 500.4 320 67.5
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.8e-139 499.6 319 66.8
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 1.8e-139 499.6 321 67.6
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 5.3e-139 498.0 320 65.6
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 1.2e-138 496.9 320 68.1
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.2e-138 496.9 320 68.1
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.5e-138 496.5 320 67.8
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.5e-138 496.5 316 68.4
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 1.5e-138 496.5 318 67.3
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.6e-138 495.7 320 68.1
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 2.6e-138 495.7 319 68.0
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 7.6e-138 494.2 307 69.4
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 7.6e-138 494.2 320 66.9
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 2.2e-137 492.7 319 67.1
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 2.9e-137 492.3 318 68.2
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 3.8e-137 491.9 321 66.7
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 3.8e-137 491.9 318 67.0
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 4.9e-137 491.5 318 68.2
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 4.9e-137 491.5 316 67.7
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 6.4e-137 491.1 318 66.0
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 6.4e-137 491.1 307 69.1
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 6.4e-137 491.1 320 66.6
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 6.4e-137 491.1 318 67.3
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 8.4e-137 490.7 318 67.9
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 1.1e-136 490.3 324 69.8
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 1.4e-136 490.0 318 67.3
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 1.9e-136 489.6 322 66.5
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 1.9e-136 489.6 318 67.6
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 2.4e-136 489.2 318 67.3
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.4e-136 489.2 318 66.7
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 2.4e-136 489.2 319 66.8
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.2e-136 488.8 318 66.7
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.2e-136 488.4 318 67.0
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 9.3e-136 487.3 319 66.5
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 1.6e-135 486.5 320 65.9
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 2.7e-135 485.7 319 66.5
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 3.5e-135 485.3 320 64.4
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 4.6e-135 485.0 318 66.4
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 1.3e-134 483.4 319 65.2
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.3e-134 483.4 320 65.6
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 1.3e-134 483.4 320 65.9
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.3e-134 483.4 318 66.0
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 1.8e-134 483.0 314 66.9
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 1.8e-134 483.0 318 65.1
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 2.3e-134 482.6 320 63.8
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.0e-134 482.3 318 65.7
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 3.9e-134 481.9 311 68.5
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.9e-134 481.9 321 67.6
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 5.1e-134 481.5 321 67.3
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 6.7e-134 481.1 320 63.8
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 8.7e-134 480.7 321 66.7
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.1e-133 480.3 321 65.7
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 1.1e-133 480.3 318 64.8
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 1.1e-133 480.3 311 68.5
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 1.5e-133 479.9 320 63.8
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 1.5e-133 479.9 323 65.6
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 1.9e-133 479.6 318 64.5
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 2.5e-133 479.2 320 65.3
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 2.5e-133 479.2 324 66.0
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 2.5e-133 479.2 306 69.6
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 3.3e-133 478.8 306 69.0
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 4.3e-133 478.4 308 68.8
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 4.3e-133 478.4 315 67.9
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 5.6e-133 478.0 318 65.7
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 5.6e-133 478.0 321 66.4
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 5.6e-133 478.0 322 67.4
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.3e-132 476.9 321 64.5
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.6e-132 476.5 321 65.1
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.6e-132 476.5 318 65.7
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 2.8e-132 475.7 310 64.8
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 2.8e-132 475.7 306 69.0
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 3.7e-132 475.3 314 66.2
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 4.8e-132 474.9 304 66.8
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.2e-132 474.6 311 65.6
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.2e-132 474.6 322 65.8
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 4.0e-131 471.9 318 64.2
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 5.3e-131 471.5 310 67.1
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.3e-131 471.5 311 66.6
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 6.9e-131 471.1 313 66.8
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 9.0e-131 470.7 321 63.9
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 9.0e-131 470.7 306 65.0
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 2.0e-130 469.5 306 68.0
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 2.0e-130 469.5 306 68.6
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.6e-130 469.2 322 64.6
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 2.6e-130 469.2 311 66.2
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 5.8e-130 468.0 306 68.6
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 7.6e-130 467.6 306 68.6
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.3e-129 466.8 311 65.3
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.7e-129 466.5 318 65.1
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 2.2e-129 466.1 315 63.5
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 2.9e-129 465.7 319 64.6
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 3.8e-129 465.3 319 63.3
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 3.8e-129 465.3 304 67.4
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 4.9e-129 464.9 319 63.3
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 4.9e-129 464.9 321 64.2
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 6.5e-129 464.5 306 68.0
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 6.5e-129 464.5 317 63.4
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 8.4e-129 464.2 314 63.1
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 8.4e-129 464.2 319 64.6
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.1e-128 463.8 304 67.8
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.4e-128 463.4 318 65.7
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 3.2e-128 462.2 321 62.9
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 7.1e-128 461.1 304 67.4
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 7.1e-128 461.1 314 62.1
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 7.1e-128 461.1 318 63.5
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 1.2e-127 460.3 309 65.7
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 1.6e-127 459.9 304 67.1
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 2.7e-127 459.1 321 62.3
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.0e-126 455.7 313 64.9
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.1e-125 453.8 295 67.1
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 1.9e-125 453.0 318 61.9
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 2.8e-124 449.1 306 63.7
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 9.0e-123 444.1 314 63.7
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.5e-122 443.4 288 67.4
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 3.4e-122 442.2 321 61.1
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 3.4e-122 442.2 289 66.4
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 7.2e-120 434.5 304 64.8
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 3.0e-118 429.1 316 62.0
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.9e-118 428.7 307 60.6
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 9.0e-115 417.5 289 63.3
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 6.5e-113 411.4 316 58.9
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 1.6e-111 406.8 270 63.7
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.4e-110 403.7 294 62.9
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.0e-110 402.5 320 55.9
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 3.3e-109 399.1 318 55.0
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 6.3e-108 394.8 310 54.5
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 4.7e-103 378.6 313 54.0
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.5e-101 373.6 322 55.6
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.5e-101 373.6 322 55.6
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 2.6e-101 372.9 305 55.4
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 3.6e-95 352.4 303 56.8
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 1.0e-94 350.9 314 52.2
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 2.3e-94 349.7 228 65.8
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.8e-91 340.1 219 66.7
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 6.8e-86 321.6 311 49.2
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 2.0e-77 293.5 274 52.2
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 2.9e-68 263.1 181 65.2
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 7.8e-66 255.0 319 41.7
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.0e-58 230.3 259 47.9
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 6.8e-46 188.7 134 62.7
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.2e-45 188.0 129 60.5
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 4.4e-45 186.0 298 36.2
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.1e-42 177.2 117 68.4
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 3.6e-39 166.4 327 32.7
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 2.7e-34 150.2 235 38.3
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 9.0e-30 135.2 330 29.4
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 9.0e-30 135.2 95 60.0
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.5e-16 90.5 58 69.0
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 1.7e-12 77.8 74 52.7


User provided reference genes

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