Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 4.4e-172 607.8 303 100.0
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 2.8e-118 429.1 272 80.9
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 3.0e-96 355.9 214 77.1
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 8.8e-96 354.4 220 75.0
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 8.8e-96 354.4 277 65.0
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.2e-95 354.0 289 62.6
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 1.2e-95 354.0 277 64.6
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.2e-95 354.0 290 62.8
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 2.0e-95 353.2 281 64.8
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 5.7e-95 351.7 244 69.7
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 5.7e-95 351.7 211 77.3
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 9.8e-95 350.9 220 73.2
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 9.8e-95 350.9 212 76.4
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 1.3e-94 350.5 220 75.5
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 1.3e-94 350.5 233 72.5
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 2.2e-94 349.7 295 61.0
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 2.8e-94 349.4 262 68.3
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 2.8e-94 349.4 219 75.3
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 3.7e-94 349.0 235 70.6
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 4.9e-94 348.6 212 75.0
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 4.9e-94 348.6 244 69.7
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 4.9e-94 348.6 228 71.9
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 6.3e-94 348.2 309 59.5
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 6.3e-94 348.2 303 60.7
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 8.3e-94 347.8 288 62.2
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.1e-93 347.4 297 60.9
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 1.1e-93 347.4 244 69.7
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 1.1e-93 347.4 244 66.4
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.4e-93 347.1 212 74.1
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.4e-93 347.1 212 74.1
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 2.4e-93 346.3 284 62.3
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 3.1e-93 345.9 283 62.9
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 5.4e-93 345.1 311 57.9
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 7.0e-93 344.7 304 60.5
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.2e-92 344.0 292 62.7
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 1.6e-92 343.6 232 69.8
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 1.6e-92 343.6 280 62.5
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 2.0e-92 343.2 272 64.3
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 3.5e-92 342.4 245 66.1
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 3.5e-92 342.4 211 74.4
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 3.5e-92 342.4 243 68.7
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 5.9e-92 341.7 219 71.2
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 7.8e-92 341.3 211 74.9
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 1.0e-91 340.9 211 75.4
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 2.3e-91 339.7 290 61.0
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 2.9e-91 339.3 210 72.4
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 2.9e-91 339.3 210 75.2
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 2.9e-91 339.3 243 67.9
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 2.9e-91 339.3 296 59.5
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 6.6e-91 338.2 280 62.1
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 1.5e-90 337.0 211 75.8
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 1.5e-90 337.0 284 61.3
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.9e-90 336.7 221 71.0
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 4.3e-90 335.5 228 68.4
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 4.3e-90 335.5 204 74.5
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 5.6e-90 335.1 238 69.7
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 1.6e-89 333.6 266 62.0
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 3.6e-89 332.4 219 71.7
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 3.6e-89 332.4 306 58.5
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 8.0e-89 331.3 287 61.7
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 1.4e-88 330.5 212 71.7
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 2.3e-88 329.7 276 58.0
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 2.3e-88 329.7 202 75.2
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 8.9e-88 327.8 212 71.7
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.2e-87 327.4 221 69.7
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 2.0e-87 326.6 211 73.0
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 5.7e-87 325.1 211 70.1
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 9.8e-87 324.3 338 52.7
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 1.1e-85 320.9 278 57.9
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 3.2e-85 319.3 283 59.0
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 7.0e-85 318.2 278 57.9
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.6e-84 317.0 365 50.7
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 5.0e-83 312.0 182 76.9
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 1.9e-82 310.1 294 57.8
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 2.8e-81 306.2 297 56.9
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 1.8e-80 303.5 296 57.4
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 6.8e-80 301.6 296 56.8
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 6.8e-80 301.6 296 56.8
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 1.5e-79 300.4 220 65.0
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 2.0e-79 300.1 299 57.5
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 2.0e-79 300.1 289 56.4
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 4.4e-79 298.9 183 73.8
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 7.5e-79 298.1 298 57.0
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 7.5e-79 298.1 305 54.8
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.3e-78 297.4 286 57.0
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 2.2e-78 296.6 298 56.4
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 2.2e-78 296.6 299 57.9
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 8.3e-78 294.7 220 60.5
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.1e-77 294.3 220 64.5
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 7.0e-77 291.6 185 72.4
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 7.0e-77 291.6 216 60.6
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 2.7e-76 289.7 210 62.4
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 3.5e-76 289.3 298 53.7
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 1.0e-75 287.7 297 53.9
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 3.9e-75 285.8 296 53.4
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 2.5e-74 283.1 295 54.2
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 4.3e-74 282.3 232 62.5
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.6e-73 280.4 288 54.5
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 2.1e-73 280.0 290 53.8
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 6.8e-72 275.0 179 73.2
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 5.8e-71 271.9 189 70.4
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 2.9e-70 269.6 286 53.5
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 2.9e-70 269.6 314 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 4.1e-69 265.8 262 50.0
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 2.7e-68 263.1 151 78.1
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 2.3e-67 260.0 219 58.0
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 9.5e-66 254.6 151 76.2
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 9.9e-63 244.6 143 77.6
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 2.8e-57 226.5 155 71.0
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 9.0e-56 221.5 138 73.2
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 1.6e-52 210.7 213 55.4
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 2.1e-52 210.3 220 55.9
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.8e-48 197.2 178 59.6
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.2e-47 194.5 178 57.3
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 9.6e-42 174.9 132 65.2
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 7.6e-39 165.2 136 61.0
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 5.5e-37 159.1 186 41.9
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 2.1e-36 157.1 198 41.9
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 9.7e-26 121.7 150 48.7
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 9.7e-18 95.1 61 73.8
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.1e-16 89.7 141 39.0
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 2.6e-10 70.5 106 41.5
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 3.4e-07 60.1 96 40.6
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 1.3e-06 58.2 35 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1572 Anthoceros agrestis HOM05D000811 ORTHO05D004743 3.8e-06 56.6 74 37.8
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 3.8e-06 56.6 59 42.4
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 3.8e-06 56.6 59 42.4
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 3.8e-06 56.6 59 42.4
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 3.8e-06 56.6 59 42.4
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 3.8e-06 56.6 59 42.4
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 3.8e-06 56.6 59 42.4
RcHm_v2.0_Chr4g0439331 Rosa chinensis HOM05D005637 ORTHO05D006983 5.0e-06 56.2 59 42.4
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 6.5e-06 55.8 59 42.4
Mapoly0082s0039 Marchantia polymorpha HOM05D005637 ORTHO05D006983 6.5e-06 55.8 59 40.7


User provided reference genes

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