Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.3e-70 269.6 141 100.0
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.1e-51 206.8 128 79.7
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 5.9e-18 94.7 128 45.3
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.2e-16 88.6 138 42.8
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 2.1e-15 86.3 160 36.2
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.4e-14 83.6 152 39.5
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.4e-14 83.6 142 42.3
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.3e-14 82.8 140 40.0
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.3e-14 82.8 136 42.6
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 3.0e-14 82.4 133 42.1
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 3.0e-14 82.4 150 36.7
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 3.0e-14 82.4 105 49.5
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 8.8e-14 80.9 135 37.0
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.3e-13 79.0 116 45.7
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.4e-13 78.6 158 37.3
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.7e-13 78.2 127 35.4
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 5.7e-13 78.2 140 41.4
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 7.4e-13 77.8 152 38.2
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 9.7e-13 77.4 140 39.3
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.7e-12 76.6 136 36.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.2e-12 76.3 113 41.6
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.2e-12 76.3 141 35.5
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.7e-12 75.5 113 42.5
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 3.7e-12 75.5 132 37.1
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 3.7e-12 75.5 122 41.8
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 3.7e-12 75.5 122 41.8
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 3.7e-12 75.5 138 37.7
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.7e-12 75.5 129 38.8
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 6.3e-12 74.7 118 37.3
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 8.2e-12 74.3 120 39.2
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 8.2e-12 74.3 140 41.4
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.4e-11 73.6 146 37.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.4e-11 73.6 137 37.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.8e-11 73.2 129 38.0
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 2.4e-11 72.8 113 38.9
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 2.4e-11 72.8 143 39.9
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.4e-11 72.8 149 38.3
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 2.4e-11 72.8 143 37.1
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 2.4e-11 72.8 134 38.8
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.1e-11 72.4 112 39.3
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.1e-11 72.4 142 36.6
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.1e-11 72.4 142 36.6
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 3.1e-11 72.4 118 39.8
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 4.1e-11 72.0 127 34.6
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 4.1e-11 72.0 113 36.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 4.1e-11 72.0 127 34.6
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 4.1e-11 72.0 153 37.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 5.3e-11 71.6 147 36.1
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 5.3e-11 71.6 114 41.2
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.3e-11 71.6 128 39.1
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 7.0e-11 71.2 146 36.3
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 7.0e-11 71.2 113 42.5
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 7.0e-11 71.2 120 41.7
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 9.1e-11 70.9 91 39.6
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 9.1e-11 70.9 153 36.6
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 9.1e-11 70.9 150 34.0
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-10 70.5 137 38.0
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-10 70.5 111 39.6
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 1.2e-10 70.5 135 40.7
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 1.6e-10 70.1 139 36.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.6e-10 70.1 149 38.9
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.6e-10 69.3 143 35.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.5e-10 68.9 146 40.4
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 3.5e-10 68.9 139 33.8
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 4.5e-10 68.6 115 37.4
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 4.5e-10 68.6 114 40.4
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 4.5e-10 68.6 114 35.1
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 7.7e-10 67.8 145 37.2
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 7.7e-10 67.8 148 37.2
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 7.7e-10 67.8 144 36.8
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 7.7e-10 67.8 141 36.9
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.0e-09 67.4 104 37.5
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-09 67.4 141 36.9
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.3e-09 67.0 135 39.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.3e-09 67.0 145 37.9
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 1.3e-09 67.0 131 38.2
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.7e-09 66.6 139 35.3
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.7e-09 66.6 128 38.3
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.7e-09 66.6 145 37.9
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-09 66.6 145 37.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-09 66.6 145 36.6
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.2e-09 66.2 142 33.1
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.2e-09 66.2 145 36.6
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-09 65.9 141 36.2
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.8e-09 65.5 143 38.5
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.8e-09 65.5 123 39.8
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 3.8e-09 65.5 128 42.2
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.8e-09 65.5 144 36.1
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 5.0e-09 65.1 145 37.9
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 6.5e-09 64.7 82 40.2
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-08 63.9 148 36.5
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-08 63.9 148 36.5
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.5e-08 63.5 138 34.8
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-08 63.5 127 34.6
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.9e-08 63.2 144 36.8
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.5e-08 62.8 137 33.6
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.5e-08 62.8 141 35.5
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.2e-08 62.4 141 35.5
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 3.2e-08 62.4 103 38.8
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 3.2e-08 62.4 148 36.5
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 4.2e-08 62.0 125 36.8
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 5.5e-08 61.6 127 35.4
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 7.2e-08 61.2 151 35.8
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 7.2e-08 61.2 134 32.8
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 7.2e-08 61.2 154 32.5
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 9.4e-08 60.8 139 33.1
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 9.4e-08 60.8 153 34.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.2e-07 60.5 119 36.1
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-07 60.5 121 33.1
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-07 60.5 145 35.2
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-07 60.5 141 35.5
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.1e-07 59.7 125 35.2
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 2.1e-07 59.7 142 34.5
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 3.6e-07 58.9 119 36.1
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 4.7e-07 58.5 149 36.9
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 6.1e-07 58.2 154 33.8
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 6.1e-07 58.2 120 35.8
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.0e-06 57.4 147 34.0
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.0e-06 57.4 145 31.0
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.4e-06 57.0 124 33.9
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.4e-06 57.0 149 35.6
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.8e-06 56.6 132 37.9
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.8e-06 56.6 119 35.3
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-06 56.6 135 35.6
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.8e-06 56.6 140 33.6
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.3e-06 56.2 111 38.7
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 3.0e-06 55.8 148 31.8
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 5.2e-06 55.1 138 35.5
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.2e-06 55.1 117 33.3
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 5.2e-06 55.1 154 34.4
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 6.7e-06 54.7 115 36.5
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 6.7e-06 54.7 132 32.6
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 6.7e-06 54.7 118 35.6
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.7e-06 54.7 120 34.2
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 8.8e-06 54.3 148 31.1


User provided reference genes

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