Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0672300 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 2.8e-126 455.3 233 100.0
Os12g0480800 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 3.8e-30 136.0 163 55.2
Zm00001eb197750 Zea mays HOM05D000056 ORTHO05D000019 1.2e-20 104.4 139 48.9
Nn3g16183 Nelumbo nucifera HOM05D000056 ORTHO05D000019 2.6e-18 96.7 148 40.5
Zm00001eb310380 Zea mays HOM05D000056 ORTHO05D000019 1.7e-17 94.0 140 43.6
Cfa009479 Carpinus fangiana HOM05D000056 ORTHO05D000019 6.3e-17 92.0 162 38.3
Manes.08G098900 Manihot esculenta HOM05D000056 ORTHO05D000019 2.4e-16 90.1 134 40.3
HPP92_021573 Vanilla planifolia HOM05D000056 ORTHO05D000019 5.3e-16 89.0 132 41.7
arahy.Tifrunner.gnm1.ann1.SAF0ZU Arachis hypogaea HOM05D000056 ORTHO05D000019 7.0e-16 88.6 161 34.8
Lj1C88T9 Lonicera japonica HOM05D000056 ORTHO05D000019 9.1e-16 88.2 161 37.3
Os12g0481000 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 1.2e-15 87.8 185 38.4
arahy.Tifrunner.gnm1.ann1.QC9T8W Arachis hypogaea HOM05D000056 ORTHO05D000019 2.0e-15 87.0 161 34.8
CSS0025572 Camellia sinensis var. sinensis HOM05D000056 ORTHO05D000019 3.5e-15 86.3 166 34.9
RcHm_v2.0_Chr4g0427551 Rosa chinensis HOM05D000056 ORTHO05D000019 5.9e-15 85.5 141 38.3
PSO063G6556 Papaver somniferum HOM05D000056 ORTHO05D000019 7.7e-15 85.1 152 38.8
ECA233G4851 Erigeron canadensis HOM05D000056 ORTHO05D000019 1.3e-14 84.3 182 35.2
Manes.09G172601 Manihot esculenta HOM05D000056 ORTHO05D000019 2.2e-14 83.6 142 38.7
Sabra01G0050200 Salix brachista HOM05D000056 ORTHO05D000019 2.2e-14 83.6 139 36.0
Dinv05113 Davidia involucrata HOM05D000056 ORTHO05D000019 3.8e-14 82.8 161 34.2
Os11g0543300 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 3.8e-14 82.8 73 54.8
vmacro04560 Vaccinium macrocarpon HOM05D000056 ORTHO05D000019 3.8e-14 82.8 149 39.6
MBI07_g24941_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 5.0e-14 82.4 146 37.0
RcHm_v2.0_Chr4g0428321 Rosa chinensis HOM05D000056 ORTHO05D000019 6.5e-14 82.0 141 37.6
Hma1.2p1_0738F.1_g211050 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 8.5e-14 81.6 141 36.2
Cpa.g.sc38.19 Carica papaya HOM05D000056 ORTHO05D000019 1.9e-13 80.5 158 36.7
PGR119G1826 Punica granatum HOM05D000056 ORTHO05D000019 2.5e-13 80.1 159 32.7
TWI18G0026 Tripterygium wilfordii HOM05D000056 ORTHO05D000019 2.5e-13 80.1 125 37.6
HanXRQChr08g0224751 Helianthus annuus HOM05D000056 ORTHO05D000019 4.2e-13 79.3 147 36.7
Rhsim08G0187500 Rhododendron simsii HOM05D000056 ORTHO05D000019 4.2e-13 79.3 147 37.4
Eucgr.J01674 Eucalyptus grandis HOM05D000056 ORTHO05D000019 5.5e-13 79.0 142 36.6
Sabra03G0115800 Salix brachista HOM05D000056 ORTHO05D000019 5.5e-13 79.0 147 34.7
Rhsim12G0027400 Rhododendron simsii HOM05D000056 ORTHO05D000019 7.2e-13 78.6 163 34.4
Actinidia11937 Actinidia chinensis HOM05D000056 ORTHO05D000019 9.4e-13 78.2 135 38.5
Eucgr.K03612 Eucalyptus grandis HOM05D000056 ORTHO05D000019 9.4e-13 78.2 133 36.8
RcHm_v2.0_Chr4g0427561 Rosa chinensis HOM05D000056 ORTHO05D000019 9.4e-13 78.2 68 51.5
Cc08_g10470 Coffea canephora HOM05D000056 ORTHO05D000019 1.2e-12 77.8 144 34.0
Potri.001G071400 Populus trichocarpa HOM05D000056 ORTHO05D000019 1.2e-12 77.8 80 48.8
Thecc.01G234400 Theobroma cacao HOM05D000056 ORTHO05D000019 1.6e-12 77.4 141 36.9
Potri.003G159400 Populus trichocarpa HOM05D000056 ORTHO05D000019 2.1e-12 77.0 141 37.6
Prupe.1G210700 Prunus persica HOM05D000056 ORTHO05D000019 2.1e-12 77.0 155 35.5
Eucgr.J01688 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.7e-12 76.6 142 37.3
Medtr5g086340 Medicago truncatula HOM05D000056 ORTHO05D000019 2.7e-12 76.6 145 33.8
PSO017G2738 Papaver somniferum HOM05D000056 ORTHO05D000019 2.7e-12 76.6 144 36.8
vmacro09879 Vaccinium macrocarpon HOM05D000056 ORTHO05D000019 2.7e-12 76.6 140 39.3
Eucgr.J01419 Eucalyptus grandis HOM05D000056 ORTHO05D000019 3.6e-12 76.3 150 38.0
PGR119G1316 Punica granatum HOM05D000056 ORTHO05D000019 4.7e-12 75.9 142 35.9
Rhsim12G0117000 Rhododendron simsii HOM05D000056 ORTHO05D000019 4.7e-12 75.9 174 32.2
TWI18G0590 Tripterygium wilfordii HOM05D000056 ORTHO05D000019 4.7e-12 75.9 125 33.6
FAN07G0778 Fragaria x ananassa HOM05D000056 ORTHO05D000019 6.1e-12 75.5 141 36.9
TWI18G0324 Tripterygium wilfordii HOM05D000056 ORTHO05D000019 6.1e-12 75.5 120 37.5
Zm00001eb113680 Zea mays HOM05D000056 ORTHO05D000019 6.1e-12 75.5 62 58.1
FvH4_4g22070 Fragaria vesca HOM05D000056 ORTHO05D000019 8.0e-12 75.1 139 36.7
FAN17G0426 Fragaria x ananassa HOM05D000056 ORTHO05D000019 8.0e-12 75.1 141 36.9
Eucgr.J01672 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.0e-11 74.7 77 42.9
Sabra03G0115700 Salix brachista HOM05D000056 ORTHO05D000019 1.0e-11 74.7 128 40.6
CDE06G2500 Ceratophyllum demersum HOM05D000056 ORTHO05D000019 1.4e-11 74.3 148 36.5
MBI07_g11069_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 1.4e-11 74.3 181 29.8
Manes.10G086300 Manihot esculenta HOM05D000056 ORTHO05D000019 1.4e-11 74.3 125 34.4
SalBow2G2264 Salvia bowleyana HOM05D000056 ORTHO05D000019 1.4e-11 74.3 128 36.7
Migut.B01079 Erythranthe guttata HOM05D000056 ORTHO05D000019 1.8e-11 73.9 158 33.5
Ca_06122_v3 Cicer arietinum L. HOM05D000056 ORTHO05D000019 2.3e-11 73.6 147 32.0
MD16G1130500 Malus domestica HOM05D000056 ORTHO05D000019 2.3e-11 73.6 142 37.3
Sabra01G0050100 Salix brachista HOM05D000056 ORTHO05D000019 2.3e-11 73.6 143 35.0
Nitab4.5_0000408g0010 Nicotiana tabacum HOM05D000056 ORTHO05D000019 3.0e-11 73.2 130 36.9
Potri.003G159300 Populus trichocarpa HOM05D000056 ORTHO05D000019 3.0e-11 73.2 131 37.4
GSVIVG01001131001 Vitis vinifera HOM05D000056 ORTHO05D000019 3.0e-11 73.2 75 48.0
Eucgr.J01665 Eucalyptus grandis HOM05D000056 ORTHO05D000019 4.0e-11 72.8 151 34.4
FAN12G2825 Fragaria x ananassa HOM05D000056 ORTHO05D000019 4.0e-11 72.8 139 36.0
Actinidia09587 Actinidia chinensis HOM05D000056 ORTHO05D000019 5.2e-11 72.4 159 32.7
Actinidia33988 Actinidia chinensis HOM05D000056 ORTHO05D000019 5.2e-11 72.4 159 34.6
CDE02G2960 Ceratophyllum demersum HOM05D000056 ORTHO05D000019 5.2e-11 72.4 148 35.8
Lsat_1_v5_gn_8_32861 Lactuca sativa HOM05D000056 ORTHO05D000019 5.2e-11 72.4 137 38.7
Actinidia15928 Actinidia chinensis HOM05D000056 ORTHO05D000019 6.7e-11 72.0 77 42.9
Aqoxy5G03013 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 6.7e-11 72.0 87 44.8
Migut.K00695 Erythranthe guttata HOM05D000056 ORTHO05D000019 6.7e-11 72.0 132 39.4
MBI07_g44697_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 6.7e-11 72.0 132 37.1
Potri.001G071300 Populus trichocarpa HOM05D000056 ORTHO05D000019 6.7e-11 72.0 140 35.0
SalBow3G3278 Salvia bowleyana HOM05D000056 ORTHO05D000019 6.7e-11 72.0 138 36.2
Haze_12537 Corylus avellana HOM05D000056 ORTHO05D000019 1.2e-10 71.2 155 34.2
Eucgr.J01668 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.2e-10 71.2 120 35.8
Glyma.02G271000 Glycine max HOM05D000056 ORTHO05D000019 1.2e-10 71.2 132 35.6
MBI07_g24938_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 1.2e-10 71.2 132 37.1
Os08g0337800 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 1.2e-10 71.2 151 37.7
PSO210G6005 Papaver somniferum HOM05D000056 ORTHO05D000019 1.2e-10 71.2 167 33.5
Rhsim12G0117300 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.2e-10 71.2 142 36.6
Solyc05g006690.3 Solanum lycopersicum HOM05D000056 ORTHO05D000019 1.2e-10 71.2 141 35.5
Eucgr.J01682 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.5e-10 70.9 175 29.7
Rhsim12G0027200 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.5e-10 70.9 82 41.5
Rhsim12G0118100 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.5e-10 70.9 145 35.2
vmacro07153 Vaccinium macrocarpon HOM05D000056 ORTHO05D000019 1.5e-10 70.9 88 36.4
MBI07_g44696_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 2.0e-10 70.5 140 31.4
PSO210G0010 Papaver somniferum HOM05D000056 ORTHO05D000019 2.0e-10 70.5 167 33.5
PSO210G2510 Papaver somniferum HOM05D000056 ORTHO05D000019 2.0e-10 70.5 167 33.5
Phvul.008G211000 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 2.0e-10 70.5 149 36.9
Psat0s1041g0160 Pisum sativum HOM05D000056 ORTHO05D000019 2.0e-10 70.5 146 32.2
Sopen05g002640 Solanum pennellii HOM05D000056 ORTHO05D000019 2.6e-10 70.1 145 33.8
Gohir.A05G376300 Gossypium hirsutum HOM05D000056 ORTHO05D000019 3.3e-10 69.7 144 32.6
TAR622G0654 Trochodendron aralioides HOM05D000056 ORTHO05D000019 3.3e-10 69.7 131 36.6
Duzib264G0530 Durio zibethinus HOM05D000056 ORTHO05D000019 4.4e-10 69.3 129 33.3
Migut.K01212 Erythranthe guttata HOM05D000056 ORTHO05D000019 4.4e-10 69.3 135 37.8
DCAR_002032 Daucus carota HOM05D000056 ORTHO05D000019 5.7e-10 68.9 123 36.6
Lj1A91T44 Lonicera japonica HOM05D000056 ORTHO05D000019 5.7e-10 68.9 76 42.1
Lj1A93G46 Lonicera japonica HOM05D000056 ORTHO05D000019 5.7e-10 68.9 64 46.9
Lj1C88T11 Lonicera japonica HOM05D000056 ORTHO05D000019 5.7e-10 68.9 141 34.8
TPR.G31838 Trifolium pratense HOM05D000056 ORTHO05D000019 5.7e-10 68.9 62 46.8
Rhsim12G0117800 Rhododendron simsii HOM05D000056 ORTHO05D000019 7.5e-10 68.6 60 51.7
DCAR_029447 Daucus carota HOM05D000038 ORTHO05D000143 9.7e-10 68.2 104 37.5
Gohir.A09G003400 Gossypium hirsutum HOM05D000056 ORTHO05D000019 9.7e-10 68.2 135 34.1
Gorai.006G003900 Gossypium raimondii HOM05D000056 ORTHO05D000019 9.7e-10 68.2 135 33.3
PGSC0003DMG400022626 Solanum tuberosum HOM05D000056 ORTHO05D000019 1.3e-09 67.8 138 34.1
Cc08_g10490 Coffea canephora HOM05D000056 ORTHO05D000019 1.7e-09 67.4 58 50.0
Eucgr.J01705 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.2e-09 67.0 75 45.3
Gorai.012G044700 Gossypium raimondii HOM05D000056 ORTHO05D000019 2.2e-09 67.0 144 31.9
ATR0582G028 Amborella trichopoda HOM05D000056 ORTHO05D000019 2.8e-09 66.6 147 34.0
Eucgr.J01703 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.8e-09 66.6 137 35.0
Gohir.D09G003120 Gossypium hirsutum HOM05D000056 ORTHO05D000019 2.8e-09 66.6 135 32.6
Lj1A91T45 Lonicera japonica HOM05D000056 ORTHO05D000019 2.8e-09 66.6 76 40.8
Eucgr.J01683 Eucalyptus grandis HOM05D000056 ORTHO05D000019 3.7e-09 66.2 59 47.5
Gohir.D04G039700 Gossypium hirsutum HOM05D000056 ORTHO05D000019 3.7e-09 66.2 144 31.9
ATR0561G081 Amborella trichopoda HOM05D000056 ORTHO05D000019 4.8e-09 65.9 134 36.6
COL.COLO4_08884 Corchorus olitorius HOM05D000056 ORTHO05D000019 4.8e-09 65.9 129 37.2
Eucgr.J01707 Eucalyptus grandis HOM05D000056 ORTHO05D000019 4.8e-09 65.9 174 33.3
MSTRG.8070 Avicennia marina HOM05D000056 ORTHO05D000019 6.3e-09 65.5 155 33.5
Aqoxy5G03012 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 8.2e-09 65.1 134 34.3
Eucgr.J01708 Eucalyptus grandis HOM05D000056 ORTHO05D000019 8.2e-09 65.1 140 36.4
MSTRG.8067 Avicennia marina HOM05D000056 ORTHO05D000019 1.1e-08 64.7 76 44.7
Cc08_g10480 Coffea canephora HOM05D000056 ORTHO05D000019 1.1e-08 64.7 160 31.9
Actinidia24069 Actinidia chinensis HOM05D000056 ORTHO05D055165 1.4e-08 64.3 57 45.6
CiPaw.05G097300 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.4e-08 64.3 147 30.6
Rhsim12G0027000 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.4e-08 64.3 58 51.7
Os11g0540600 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 1.8e-08 63.9 144 36.1
PSO339G3551 Papaver somniferum HOM05D000056 ORTHO05D000019 1.8e-08 63.9 63 44.4
PSO384G1701 Papaver somniferum HOM05D000056 ORTHO05D000019 1.8e-08 63.9 145 29.0
HPP92_008258 Vanilla planifolia HOM05D000056 ORTHO05D000019 1.8e-08 63.9 136 33.1
VMungo0647G2157 Vigna mungo HOM05D000056 ORTHO05D000019 1.8e-08 63.9 144 32.6
Cc00_g32480 Coffea canephora HOM05D000056 ORTHO05D000019 3.1e-08 63.2 152 32.2
HanXRQChr08g0225221 Helianthus annuus HOM05D000056 ORTHO05D000019 5.3e-08 62.4 56 50.0
Lj1A88G46 Lonicera japonica HOM05D000056 ORTHO05D000019 5.3e-08 62.4 148 37.8
TPR.G31839 Trifolium pratense HOM05D000056 ORTHO05D000019 5.3e-08 62.4 167 31.1
Eucgr.J01737 Eucalyptus grandis HOM05D000056 ORTHO05D000019 7.0e-08 62.0 70 42.9
MBI07_g24936_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 9.1e-08 61.6 60 45.0
Eucgr.J01712 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.2e-07 61.2 155 31.6
PSO673G0029 Papaver somniferum HOM05D000056 ORTHO05D000019 2.0e-07 60.5 107 33.6
PSO135G0612 Papaver somniferum HOM05D000056 ORTHO05D000019 2.7e-07 60.1 63 42.9
Eucgr.J01686 Eucalyptus grandis HOM05D000056 ORTHO05D000019 5.9e-07 58.9 147 29.9
Eucgr.J01689 Eucalyptus grandis HOM05D000056 ORTHO05D000019 5.9e-07 58.9 63 41.3
Eucgr.J01692 Eucalyptus grandis HOM05D000056 ORTHO05D000019 5.9e-07 58.9 133 31.6
Eucgr.J01732 Eucalyptus grandis HOM05D000056 ORTHO05D000019 5.9e-07 58.9 62 46.8
Manes.07G032000 Manihot esculenta HOM05D000056 ORTHO05D000019 5.9e-07 58.9 135 30.4
PSO421G0203 Papaver somniferum HOM05D000056 ORTHO05D000019 5.9e-07 58.9 107 32.7
PSO724G0953 Papaver somniferum HOM05D000056 ORTHO05D000019 7.7e-07 58.5 107 32.7
Eucgr.L01084 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.0e-06 58.2 77 39.0
Hma1.2p1_1061F.1_g253330 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 1.0e-06 58.2 124 33.9
Rhsim12G0117100 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.0e-06 58.2 44 54.5
CSS0049643 Camellia sinensis var. sinensis HOM05D000056 ORTHO05D000019 1.3e-06 57.8 120 33.3
Actinidia11921 Actinidia chinensis HOM05D000056 ORTHO05D000019 1.7e-06 57.4 138 33.3
Eucgr.J01679 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.7e-06 57.4 76 38.2
RcHm_v2.0_Chr4g0428331 Rosa chinensis HOM05D000056 ORTHO05D000019 1.7e-06 57.4 46 50.0
Eucgr.J01693 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.2e-06 57.0 64 42.2
Lj1A713T56 Lonicera japonica HOM05D000056 ORTHO05D000019 2.2e-06 57.0 127 35.4
Medtr5g086300 Medicago truncatula HOM05D000056 ORTHO05D000019 2.2e-06 57.0 46 50.0
Cc11_g06710 Coffea canephora HOM05D000056 ORTHO05D000019 2.9e-06 56.6 132 31.8
THA.LOC104801412 Tarenaya hassleriana HOM05D000056 ORTHO05D000019 2.9e-06 56.6 117 30.8
Eucgr.J01673 Eucalyptus grandis HOM05D000056 ORTHO05D000019 5.0e-06 55.8 151 32.5
Eucgr.J01706 Eucalyptus grandis HOM05D000056 ORTHO05D000019 5.0e-06 55.8 144 34.0
TPR.G20320 Trifolium pratense HOM05D000056 ORTHO05D000019 5.0e-06 55.8 60 45.0
Rhsim12G0027100 Rhododendron simsii HOM05D000056 ORTHO05D000019 6.5e-06 55.5 63 39.7
Gohir.D09G003140 Gossypium hirsutum HOM05D000056 ORTHO05D000019 8.5e-06 55.1 51 43.1


User provided reference genes

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