Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0672175 Oryza sativa ssp. japonica HOM05D002203 ORTHO05D002647 3.7e-38 161.0 79 100.0
Sabra08G0114200 Salix brachista HOM05D002203 ORTHO05D002647 2.4e-13 78.6 73 53.4
Potri.008G150100 Populus trichocarpa HOM05D002203 ORTHO05D002647 3.2e-13 78.2 73 53.4
CANSAT78G0501 Cannabis sativa HOM05D002203 ORTHO05D002647 1.6e-12 75.9 70 57.1
ClCG05G005280 Citrullus lanatus HOM05D002203 ORTHO05D002647 4.6e-12 74.3 70 57.1
Sed0023903 Sechium edule HOM05D002203 ORTHO05D002647 6.0e-12 73.9 70 57.1
CiPaw.01G163500 Carya illinoinensis HOM05D002203 ORTHO05D002647 7.9e-12 73.6 69 55.1
Nn1g02239 Nelumbo nucifera HOM05D002203 ORTHO05D002647 7.9e-12 73.6 68 55.9
Prupe.1G155300 Prunus persica HOM05D002203 ORTHO05D002647 7.9e-12 73.6 72 56.9
Cfa015615 Carpinus fangiana HOM05D002203 ORTHO05D002647 1.0e-11 73.2 73 56.2
MELO3C006547.2 Cucumis melo HOM05D002203 ORTHO05D002647 1.0e-11 73.2 70 54.3
CsaV3_3G013510 Cucumis sativus L. HOM05D002203 ORTHO05D002647 1.0e-11 73.2 70 54.3
Phvul.002G047400 Phaseolus vulgaris HOM05D002203 ORTHO05D002647 1.0e-11 73.2 74 56.8
PGR004G2428 Punica granatum HOM05D002203 ORTHO05D002647 1.0e-11 73.2 66 54.5
TWI73G0791 Tripterygium wilfordii HOM05D002203 ORTHO05D002647 1.0e-11 73.2 68 57.4
CiPaw.02G095100 Carya illinoinensis HOM05D002203 ORTHO05D002647 1.3e-11 72.8 73 54.8
Duzib151G0334 Durio zibethinus HOM05D002203 ORTHO05D002647 1.3e-11 72.8 68 55.9
TWI09G1215 Tripterygium wilfordii HOM05D002203 ORTHO05D002647 1.3e-11 72.8 68 57.4
GSVIVG01017925001 Vitis vinifera HOM05D002203 ORTHO05D002647 1.3e-11 72.8 65 58.5
Ciclev10004440m.g Citrus clementina HOM05D002203 ORTHO05D002647 1.8e-11 72.4 68 57.4
COL.COLO4_06198 Corchorus olitorius HOM05D002203 ORTHO05D002647 1.8e-11 72.4 65 58.5
Dinv38423 Davidia involucrata HOM05D002203 ORTHO05D002647 1.8e-11 72.4 68 57.4
Gohir.D02G037600 Gossypium hirsutum HOM05D002203 ORTHO05D002647 1.8e-11 72.4 67 56.7
Gorai.005G041500 Gossypium raimondii HOM05D002203 ORTHO05D002647 1.8e-11 72.4 67 56.7
Hma1.2p1_0995F.1_g245630 Hydrangea macrophylla HOM05D002203 ORTHO05D002647 2.3e-11 72.0 73 54.8
Potri.010G090900 Populus trichocarpa HOM05D002203 ORTHO05D002647 2.3e-11 72.0 73 50.7
Sabra10G0052500 Salix brachista HOM05D002203 ORTHO05D002647 2.3e-11 72.0 73 50.7
Sed0017737 Sechium edule HOM05D002203 ORTHO05D002647 2.3e-11 72.0 70 54.3
Haze_00928 Corylus avellana HOM05D002203 ORTHO05D002647 3.0e-11 71.6 69 55.1
Dinv44507 Davidia involucrata HOM05D002203 ORTHO05D002647 3.0e-11 71.6 68 55.9
Gohir.D09G216600 Gossypium hirsutum HOM05D002203 ORTHO05D002647 3.0e-11 71.6 68 54.4
MD13G1188000 Malus domestica HOM05D002203 ORTHO05D002647 3.0e-11 71.6 72 54.2
MD16G1188600 Malus domestica HOM05D002203 ORTHO05D002647 3.0e-11 71.6 72 55.6
Thecc.04G227100 Theobroma cacao HOM05D002203 ORTHO05D002647 3.0e-11 71.6 68 55.9
Gohir.A02G029701 Gossypium hirsutum HOM05D002203 ORTHO05D002647 3.9e-11 71.2 67 55.2
Duzib212G0654 Durio zibethinus HOM05D002203 ORTHO05D002647 5.1e-11 70.9 64 57.8
Gohir.A09G214100 Gossypium hirsutum HOM05D002203 ORTHO05D002647 5.1e-11 70.9 64 56.2
RcHm_v2.0_Chr4g0416821 Rosa chinensis HOM05D002203 ORTHO05D002647 5.1e-11 70.9 71 53.5
CSS0019077 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D002647 6.7e-11 70.5 64 59.4
Glyma.01G239200 Glycine max HOM05D002203 ORTHO05D002647 6.7e-11 70.5 72 55.6
Glyma.11G004300 Glycine max HOM05D002203 ORTHO05D002647 6.7e-11 70.5 72 55.6
Gorai.006G237100 Gossypium raimondii HOM05D002203 ORTHO05D002647 6.7e-11 70.5 68 52.9
TAR362G1000 Trochodendron aralioides HOM05D002203 ORTHO05D002647 6.7e-11 70.5 64 57.8
VMungo1215G1236 Vigna mungo HOM05D002203 ORTHO05D002647 6.7e-11 70.5 72 55.6
Nn4g26258 Nelumbo nucifera HOM05D002203 ORTHO05D002647 8.7e-11 70.1 68 55.9
AT5G19330 Arabidopsis thaliana HOM05D002203 ORTHO05D002647 1.1e-10 69.7 64 54.7
Aa31LG11G10340 Aethionema arabicum HOM05D002203 ORTHO05D002647 1.5e-10 69.3 64 54.7
Duzib052G0929 Durio zibethinus HOM05D002203 ORTHO05D002647 1.5e-10 69.3 64 56.2
Thhalv10012813m.g Eutrema salsugineum HOM05D002203 ORTHO05D002647 1.5e-10 69.3 64 54.7
Glyma.20G143500 Glycine max HOM05D002203 ORTHO05D002647 1.5e-10 69.3 78 48.7
Zm00001eb349910 Zea mays HOM05D002203 ORTHO05D002647 1.5e-10 69.3 69 60.9
Atru.chr4.2512 Acer truncatum HOM05D002203 ORTHO05D002647 1.9e-10 68.9 68 54.4
PSO170G5776 Papaver somniferum HOM05D002203 ORTHO05D002647 1.9e-10 68.9 65 52.3
PSO302G0024 Papaver somniferum HOM05D002203 ORTHO05D002647 1.9e-10 68.9 65 52.3
QL06p003393 Quercus lobata HOM05D002203 ORTHO05D002647 1.9e-10 68.9 67 55.2
Rhsim04G0204900 Rhododendron simsii HOM05D002203 ORTHO05D002647 1.9e-10 68.9 60 60.0
arahy.Tifrunner.gnm1.ann1.7RR6EE Arachis hypogaea HOM05D002203 ORTHO05D002647 3.3e-10 68.2 71 52.1
arahy.Tifrunner.gnm1.ann1.C0GFHN Arachis hypogaea HOM05D002203 ORTHO05D002647 3.3e-10 68.2 71 52.1
EL10As3g23353 Beta vulgaris HOM05D002203 ORTHO05D002647 3.3e-10 68.2 67 53.7
FvH4_4g15040 Fragaria vesca HOM05D002203 ORTHO05D002647 3.3e-10 68.2 68 54.4
FAN07G1362 Fragaria x ananassa HOM05D002203 ORTHO05D002647 3.3e-10 68.2 68 54.4
FAN12G3945 Fragaria x ananassa HOM05D002203 ORTHO05D002647 3.3e-10 68.2 68 54.4
FAN22G0461 Fragaria x ananassa HOM05D002203 ORTHO05D002647 3.3e-10 68.2 68 54.4
Lj6C597G13 Lonicera japonica HOM05D002203 ORTHO05D002647 3.3e-10 68.2 67 55.2
Manes.15G026400 Manihot esculenta HOM05D002203 ORTHO05D002647 3.3e-10 68.2 71 52.1
CARHR193630 Cardamine hirsuta HOM05D002203 ORTHO05D033568 4.3e-10 67.8 64 53.1
Psat4g211360 Pisum sativum HOM05D002203 ORTHO05D002647 4.3e-10 67.8 72 51.4
Psat6g208840 Pisum sativum HOM05D002203 ORTHO05D002647 4.3e-10 67.8 64 51.6
AUR62038091 Chenopodium quinoa HOM05D002203 ORTHO05D002647 5.6e-10 67.4 67 52.2
Glyma.10G250100 Glycine max HOM05D002203 ORTHO05D002647 5.6e-10 67.4 64 53.1
Lj5g0014423 Lotus japonicus HOM05D002203 ORTHO05D002647 5.6e-10 67.4 64 53.1
Medtr1g104870 Medicago truncatula HOM05D002203 ORTHO05D002647 5.6e-10 67.4 64 53.1
Phvul.007G054500 Phaseolus vulgaris HOM05D002203 ORTHO05D002647 5.6e-10 67.4 66 53.0
VMungo0720G0963 Vigna mungo HOM05D002203 ORTHO05D002647 5.6e-10 67.4 66 51.5
Manes.03G181400 Manihot esculenta HOM05D002203 ORTHO05D002647 7.4e-10 67.0 67 52.2
TPR.G5509 Trifolium pratense HOM05D002203 ORTHO05D002647 7.4e-10 67.0 63 52.4
TAR633G0927 Trochodendron aralioides HOM05D002203 ORTHO05D002647 7.4e-10 67.0 64 54.7
Carub.0006s1767 Capsella rubella HOM05D002203 ORTHO05D002647 9.6e-10 66.6 64 51.6
Zm00001eb287530 Zea mays HOM05D002203 ORTHO05D002647 9.6e-10 66.6 69 58.0
Cpa.g.sc147.32 Carica papaya HOM05D002203 ORTHO05D002647 1.3e-09 66.2 67 53.7
AUR62038643 Chenopodium quinoa HOM05D002203 ORTHO05D002647 1.3e-09 66.2 67 50.7
AUR62043184 Chenopodium quinoa HOM05D002203 ORTHO05D002647 1.3e-09 66.2 67 50.7
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.3e-09 66.2 68 51.5
Ca_10926_v3 Cicer arietinum L. HOM05D002203 ORTHO05D002647 1.6e-09 65.9 63 50.8
Aqoxy2G03344 Aquilegia oxysepala HOM05D002203 ORTHO05D002647 3.7e-09 64.7 70 47.1
arahy.Tifrunner.gnm1.ann1.LY1943 Arachis hypogaea HOM05D002203 ORTHO05D002647 3.7e-09 64.7 72 50.0
Ca_24382_v3 Cicer arietinum L. HOM05D002203 ORTHO05D002647 3.7e-09 64.7 72 50.0
Sc19g0004300 Simmondsia chinensis HOM05D002203 ORTHO05D002647 3.7e-09 64.7 72 50.0
Eucgr.H03553 Eucalyptus grandis HOM05D002203 ORTHO05D002647 4.8e-09 64.3 65 49.2
AL6G30820 Arabidopsis lyrata HOM05D002203 ORTHO05D002647 6.2e-09 63.9 65 52.3
BcaB08g36582 Brassica carinata HOM05D002203 ORTHO05D002647 1.1e-08 63.2 67 47.8
BcaC04g18577 Brassica carinata HOM05D002203 ORTHO05D002647 1.1e-08 63.2 67 47.8
C09p56950 Brassica napus HOM05D002203 ORTHO05D002647 1.1e-08 63.2 67 47.8
BolC9t58549H Brassica oleracea HOM05D002203 ORTHO05D002647 1.1e-08 63.2 67 47.8
BraA10t44106Z Brassica rapa HOM05D002203 ORTHO05D002647 1.1e-08 63.2 67 47.8
FAN17G0845 Fragaria x ananassa HOM05D002203 ORTHO05D002647 1.1e-08 63.2 64 54.7
Actinidia40168 Actinidia chinensis HOM05D002203 ORTHO05D002647 1.4e-08 62.8 64 53.1
A10p20350 Brassica napus HOM05D002203 ORTHO05D002647 1.4e-08 62.8 65 49.2
HPP92_003155 Vanilla planifolia HOM05D002203 ORTHO05D002647 1.8e-08 62.4 68 48.5
AL3G16810 Arabidopsis lyrata HOM05D002203 ORTHO05D002647 2.4e-08 62.0 64 51.6
THA.LOC104818780 Tarenaya hassleriana HOM05D002203 ORTHO05D002647 2.4e-08 62.0 61 54.1
ATR0626G299 Amborella trichopoda HOM05D002203 ORTHO05D002647 3.1e-08 61.6 60 51.7
Lalb_Chr05g0210891 Lupinus albus HOM05D002203 ORTHO05D002647 3.1e-08 61.6 59 49.2
Hund12162 Selenicereus undatus HOM05D002203 ORTHO05D002647 3.1e-08 61.6 67 43.3
Oeu041702.3 Olea europaea HOM05D002203 ORTHO05D002647 4.0e-08 61.2 74 47.3
arahy.Tifrunner.gnm1.ann1.VG4MW6 Arachis hypogaea HOM05D002203 ORTHO05D002647 5.3e-08 60.8 72 47.2
Sp6g25080 Schrenkiella parvula HOM05D002203 ORTHO05D002647 6.9e-08 60.5 61 49.2
AUR62040485 Chenopodium quinoa HOM05D002203 ORTHO05D002647 9.0e-08 60.1 69 46.4
PSO832G0159 Papaver somniferum HOM05D002203 ORTHO05D002647 9.0e-08 60.1 61 50.8
TPR.G37872 Trifolium pratense HOM05D002203 ORTHO05D002647 9.0e-08 60.1 72 44.4
arahy.Tifrunner.gnm1.ann1.EI49T9 Arachis hypogaea HOM05D002203 ORTHO05D002647 1.2e-07 59.7 67 47.8
Sc13g0004220 Simmondsia chinensis HOM05D002203 ORTHO05D002647 1.2e-07 59.7 60 51.7
Aa31LG5G16470 Aethionema arabicum HOM05D002203 ORTHO05D002647 1.5e-07 59.3 59 47.5
Ah.13g073940 Amaranthus hybridus HOM05D002203 ORTHO05D002647 1.5e-07 59.3 67 44.8
PSO210G7293 Papaver somniferum HOM05D002203 ORTHO05D002647 1.5e-07 59.3 61 50.8
EL10Ac7g17234 Beta vulgaris HOM05D002203 ORTHO05D002647 2.0e-07 58.9 64 45.3
Hund18000 Selenicereus undatus HOM05D002203 ORTHO05D002647 2.0e-07 58.9 63 49.2
Ah.15g091930 Amaranthus hybridus HOM05D002203 ORTHO05D002647 2.6e-07 58.5 59 44.1
A03p09430 Brassica napus HOM05D002203 ORTHO05D002647 2.6e-07 58.5 65 49.2
BraA03t10261Z Brassica rapa HOM05D002203 ORTHO05D002647 2.6e-07 58.5 65 49.2
CDE05G3444 Ceratophyllum demersum HOM05D002203 ORTHO05D002647 3.4e-07 58.2 62 48.4
CDE11G0876 Ceratophyllum demersum HOM05D002203 ORTHO05D002647 5.8e-07 57.4 62 48.4
SGA_v2.0_scaffold81G25999 Striga asiatica HOM05D002203 ORTHO05D002647 5.8e-07 57.4 63 49.2
Medtr5g005940 Medicago truncatula HOM05D002203 ORTHO05D002647 7.6e-07 57.0 67 46.3
Nitab4.5_0000458g0070 Nicotiana tabacum HOM05D002203 ORTHO05D002647 7.6e-07 57.0 65 49.2
GSVIVG01011129001 Vitis vinifera HOM05D002203 ORTHO05D002647 9.9e-07 56.6 69 46.4
PGSC0003DMG400012880 Solanum tuberosum HOM05D002203 ORTHO05D002647 1.3e-06 56.2 65 47.7
Cc01_g19440 Coffea canephora HOM05D002203 ORTHO05D002647 1.7e-06 55.8 66 48.5
Nitab4.5_0006749g0030 Nicotiana tabacum HOM05D002203 ORTHO05D002647 2.2e-06 55.5 65 46.2
Thecc.01G278800 Theobroma cacao HOM05D002203 ORTHO05D002647 2.2e-06 55.5 60 48.3
Nitab4.5_0008797g0060 Nicotiana tabacum HOM05D002203 ORTHO05D002647 2.9e-06 55.1 67 49.3
Oeu028070.1 Olea europaea HOM05D002203 ORTHO05D002647 2.9e-06 55.1 71 46.5
CAN.G1549.2 Capsicum annuum HOM05D002203 ORTHO05D002647 3.8e-06 54.7 68 47.1
Dinv34756 Davidia involucrata HOM05D002203 ORTHO05D002647 3.8e-06 54.7 60 50.0
Nitab4.5_0000759g0190 Nicotiana tabacum HOM05D002203 ORTHO05D002647 3.8e-06 54.7 62 50.0
PGSC0003DMG401020126 Solanum tuberosum HOM05D002203 ORTHO05D002647 3.8e-06 54.7 62 50.0
Actinidia09134 Actinidia chinensis HOM05D002203 ORTHO05D002647 4.9e-06 54.3 60 46.7
Potri.005G210000 Populus trichocarpa HOM05D002203 ORTHO05D002647 4.9e-06 54.3 80 41.2
Sabra05G0160000 Salix brachista HOM05D002203 ORTHO05D002647 4.9e-06 54.3 63 46.0
Sopen06g035640 Solanum pennellii HOM05D002203 ORTHO05D002647 4.9e-06 54.3 62 50.0
Hma1.2p1_0257F.1_g103380 Hydrangea macrophylla HOM05D002203 ORTHO05D002647 6.4e-06 53.9 70 44.3
Solyc06g084250.4 Solanum lycopersicum HOM05D002203 ORTHO05D002647 6.4e-06 53.9 62 50.0
AUR62044044 Chenopodium quinoa HOM05D002203 ORTHO05D002647 8.4e-06 53.5 69 43.5
Solyc09g065210.4 Solanum lycopersicum HOM05D002203 ORTHO05D002647 8.4e-06 53.5 59 49.2


User provided reference genes

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