Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 4.6e-178 627.9 339 100.0
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 9.7e-152 540.4 348 87.1
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 4.7e-122 441.8 339 66.4
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 4.4e-120 435.3 327 65.7
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.3e-119 433.7 335 65.4
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 7.0e-118 427.9 324 65.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.6e-117 426.8 268 76.1
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.6e-117 426.8 264 76.1
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.6e-117 426.8 272 75.0
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 2.1e-117 426.4 268 75.4
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.5e-117 425.6 268 75.0
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 6.0e-117 424.9 268 75.4
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 6.0e-117 424.9 268 75.4
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 7.8e-117 424.5 268 75.7
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.0e-116 424.1 262 77.1
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.0e-116 424.1 268 74.6
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.0e-116 424.1 337 62.9
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.0e-116 424.1 264 75.4
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.3e-116 423.7 268 75.0
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.3e-116 423.7 264 75.8
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.7e-116 423.3 272 74.6
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 2.3e-116 422.9 268 75.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 2.3e-116 422.9 264 75.8
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.0e-116 422.5 341 63.9
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.9e-116 422.2 268 73.9
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.0e-116 421.8 268 75.4
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 6.6e-116 421.4 268 75.0
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 6.6e-116 421.4 262 76.7
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 8.6e-116 421.0 268 76.1
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 8.6e-116 421.0 345 62.3
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.9e-115 419.9 268 73.9
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.5e-115 419.5 268 73.9
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 3.3e-115 419.1 340 63.5
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.3e-115 419.1 268 73.1
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 3.3e-115 419.1 342 61.7
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 5.6e-115 418.3 345 62.0
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 7.3e-115 417.9 268 73.5
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 7.3e-115 417.9 268 74.6
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 7.3e-115 417.9 268 73.1
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 1.2e-114 417.2 268 73.5
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.2e-114 417.2 258 76.4
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.1e-114 416.4 268 71.6
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.8e-114 416.0 268 71.6
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 3.6e-114 415.6 337 63.2
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 3.6e-114 415.6 344 62.2
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 4.7e-114 415.2 268 73.5
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 4.7e-114 415.2 268 73.1
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 6.2e-114 414.8 268 73.5
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 8.1e-114 414.5 266 73.7
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 8.1e-114 414.5 262 73.7
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.1e-113 414.1 275 70.9
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.1e-113 414.1 340 61.5
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.1e-113 414.1 335 62.7
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.1e-113 414.1 344 60.5
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.4e-113 413.7 268 72.8
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.4e-113 413.7 332 61.4
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.4e-113 413.7 265 74.0
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-113 413.3 268 73.5
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-113 413.3 268 73.5
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.8e-113 413.3 258 76.0
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 1.8e-113 413.3 266 73.3
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.3e-113 412.9 268 73.5
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.3e-113 412.9 324 62.7
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.3e-113 412.9 268 73.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 2.3e-113 412.9 268 73.1
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.1e-113 412.5 268 73.1
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 4.0e-113 412.1 266 73.7
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 4.0e-113 412.1 268 71.3
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 5.2e-113 411.8 266 73.3
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 5.2e-113 411.8 266 73.7
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 5.2e-113 411.8 265 72.8
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 6.8e-113 411.4 264 72.7
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 6.8e-113 411.4 324 62.3
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 6.8e-113 411.4 268 72.8
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 6.8e-113 411.4 327 62.7
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 8.9e-113 411.0 340 60.9
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 8.9e-113 411.0 268 72.8
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 8.9e-113 411.0 337 61.7
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 8.9e-113 411.0 344 61.3
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 8.9e-113 411.0 268 72.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-112 410.6 347 60.8
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.2e-112 410.6 347 60.8
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.2e-112 410.6 338 62.1
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-112 410.2 347 60.8
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.5e-112 410.2 346 61.0
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.5e-112 410.2 346 60.1
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.5e-112 410.2 328 62.8
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.5e-112 410.2 268 71.6
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.0e-112 409.8 268 72.0
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-112 409.8 340 60.9
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.0e-112 409.8 340 60.6
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.0e-112 409.8 268 72.8
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.0e-112 409.8 268 72.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.0e-112 409.8 237 80.6
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.6e-112 409.5 268 70.5
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 2.6e-112 409.5 235 79.6
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 2.6e-112 409.5 284 70.1
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.4e-112 409.1 268 72.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 4.4e-112 408.7 340 60.9
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 4.4e-112 408.7 268 72.8
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 9.9e-112 407.5 268 70.5
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.3e-111 407.1 266 72.2
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.7e-111 406.8 262 71.8
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.7e-111 406.8 266 72.9
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 2.9e-111 406.0 268 70.1
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 4.9e-111 405.2 260 74.6
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 4.9e-111 405.2 266 72.2
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.1e-110 404.1 269 72.1
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 1.4e-110 403.7 266 71.4
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 1.4e-110 403.7 266 71.4
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 3.2e-110 402.5 267 70.8
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 3.2e-110 402.5 267 70.8
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.1e-110 402.1 268 71.6
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 5.4e-110 401.7 267 71.9
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.5e-109 399.1 228 82.0
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.6e-109 398.7 273 71.1
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 7.8e-109 397.9 268 70.1
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 5.1e-108 395.2 342 59.6
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 4.3e-107 392.1 268 70.1
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 9.5e-107 391.0 268 70.9
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.2e-106 390.6 268 69.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.4e-105 387.1 219 80.8
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.8e-105 386.7 330 62.1
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.0e-104 383.3 219 80.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 4.4e-104 382.1 218 79.4
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.7e-103 380.2 264 67.0
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.7e-103 380.2 265 66.8
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 8.4e-103 377.9 216 81.5
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 3.2e-102 375.9 219 79.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.6e-101 373.6 216 80.1
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 4.6e-101 372.1 216 79.6
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 3.8e-95 352.4 206 79.6
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 6.4e-95 351.7 217 73.7
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.3e-92 344.0 274 62.4
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.3e-84 317.4 265 58.5
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 6.9e-81 305.1 233 65.2
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.3e-68 264.2 154 79.2
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 1.3e-68 264.2 181 68.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.3e-68 264.2 165 75.2
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-64 251.1 217 60.8
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 9.7e-59 231.5 229 54.1
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 3.6e-53 213.0 139 72.7
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 8.8e-52 208.4 152 67.1
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.0e-51 207.2 152 66.4
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.6e-51 206.8 225 52.9
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.4e-51 206.1 146 65.8
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.0e-47 194.9 215 54.9
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 5.2e-28 129.4 139 49.6
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 4.7e-13 79.7 49 69.4
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 1.3e-07 61.6 86 41.9


User provided reference genes

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