Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0662800 Oryza sativa ssp. japonica HOM05D003587 ORTHO05D004139 3.8e-62 241.5 138 100.0
LjContig00564g0003567 Lotus japonicus HOM05D003587 ORTHO05D004139 6.3e-25 117.9 93 66.7
TPR.G16429 Trifolium pratense HOM05D003587 ORTHO05D004139 1.4e-24 116.7 92 71.7
HPP92_001660 Vanilla planifolia HOM05D003587 ORTHO05D004139 5.4e-24 114.8 122 54.1
SalBow6G4759 Salvia bowleyana HOM05D003587 ORTHO05D004139 3.5e-23 112.1 65 84.6
MSTRG.21324 Avicennia marina HOM05D003587 ORTHO05D004139 4.6e-23 111.7 105 58.1
TAR623G1513 Trochodendron aralioides HOM05D003587 ORTHO05D004139 4.6e-23 111.7 107 58.9
EL10Ac4g10057 Beta vulgaris HOM05D003587 ORTHO05D004139 5.9e-23 111.3 65 81.5
Nn2g14595 Nelumbo nucifera HOM05D003587 ORTHO05D004139 7.8e-23 110.9 66 80.3
Solyc11g072170.2 Solanum lycopersicum HOM05D003587 ORTHO05D004139 7.8e-23 110.9 63 87.3
CiPaw.13G146000 Carya illinoinensis HOM05D003587 ORTHO05D004139 1.0e-22 110.5 65 81.5
FAN25G2256 Fragaria x ananassa HOM05D003587 ORTHO05D004139 1.0e-22 110.5 96 58.3
Lsat_1_v5_gn_5_64961 Lactuca sativa HOM05D003587 ORTHO05D004139 1.0e-22 110.5 65 83.1
Prupe.4G269300 Prunus persica HOM05D003587 ORTHO05D004139 1.0e-22 110.5 94 71.3
GSVIVG01037380001 Vitis vinifera HOM05D003587 ORTHO05D004139 1.0e-22 110.5 65 81.5
FvH4_3g27580 Fragaria vesca HOM05D003587 ORTHO05D004139 1.3e-22 110.2 93 60.2
Sed0023945 Sechium edule HOM05D003587 ORTHO05D004139 1.3e-22 110.2 65 78.5
PSO357G0695 Papaver somniferum HOM05D003587 ORTHO05D004139 1.7e-22 109.8 63 84.1
CSS0013509 Camellia sinensis var. sinensis HOM05D003587 ORTHO05D004139 2.3e-22 109.4 65 81.5
Eucgr.B03764 Eucalyptus grandis HOM05D003587 ORTHO05D004139 2.3e-22 109.4 87 65.5
QL01p020717 Quercus lobata HOM05D003587 ORTHO05D004139 2.3e-22 109.4 65 83.1
ECA233G3436 Erigeron canadensis HOM05D003587 ORTHO05D000001 2.9e-22 109.0 65 80.0
Manes.02G134100 Manihot esculenta HOM05D003587 ORTHO05D004139 2.9e-22 109.0 65 81.5
PGSC0003DMG400027414 Solanum tuberosum HOM05D003587 ORTHO05D004139 2.9e-22 109.0 62 87.1
CAN.G1085.3 Capsicum annuum HOM05D003587 ORTHO05D004139 3.9e-22 108.6 65 81.5
THA.LOC104811210 Tarenaya hassleriana HOM05D003587 ORTHO05D004139 3.9e-22 108.6 65 80.0
RcHm_v2.0_Chr5g0050121 Rosa chinensis HOM05D003587 ORTHO05D004139 5.0e-22 108.2 139 48.2
Thecc.09G250900 Theobroma cacao HOM05D003587 ORTHO05D004139 5.0e-22 108.2 64 82.8
HanXRQChr12g0378151 Helianthus annuus HOM05D003587 ORTHO05D004139 6.6e-22 107.8 65 80.0
Hund07482 Selenicereus undatus HOM05D003587 ORTHO05D004139 6.6e-22 107.8 65 81.5
CANSAT54G0304 Cannabis sativa HOM05D003587 ORTHO05D004139 8.6e-22 107.5 65 80.0
CDE02G1319 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 8.6e-22 107.5 118 53.4
ClCG03G014310 Citrullus lanatus HOM05D003587 ORTHO05D004139 8.6e-22 107.5 64 79.7
MELO3C015606.2 Cucumis melo HOM05D003587 ORTHO05D004139 8.6e-22 107.5 64 79.7
CsaV3_1G041910 Cucumis sativus L. HOM05D003587 ORTHO05D004139 8.6e-22 107.5 64 79.7
Gohir.A09G109701 Gossypium hirsutum HOM05D003587 ORTHO05D004139 1.5e-21 106.7 64 79.7
Gorai.006G123700 Gossypium raimondii HOM05D003587 ORTHO05D004139 1.5e-21 106.7 64 79.7
Medtr5g088730 Medicago truncatula HOM05D003587 ORTHO05D004139 1.5e-21 106.7 120 55.8
Sabra16G0133600 Salix brachista HOM05D003587 ORTHO05D004139 1.5e-21 106.7 64 79.7
Cfa010158 Carpinus fangiana HOM05D003587 ORTHO05D004139 2.5e-21 105.9 126 52.4
COL.COLO4_00327 Corchorus olitorius HOM05D003587 ORTHO05D004139 3.3e-21 105.5 90 68.9
Haze_23544 Corylus avellana HOM05D003587 ORTHO05D004139 3.3e-21 105.5 128 52.3
Duzib150G0536 Durio zibethinus HOM05D003587 ORTHO05D004139 3.3e-21 105.5 64 79.7
Lalb_Chr10g0106041 Lupinus albus HOM05D003587 ORTHO05D004139 3.3e-21 105.5 65 78.5
Sopen11g029820 Solanum pennellii HOM05D003587 ORTHO05D004139 3.3e-21 105.5 62 83.9
Nitab4.5_0002161g0020 Nicotiana tabacum HOM05D003587 ORTHO05D004139 5.6e-21 104.8 63 82.5
arahy.Tifrunner.gnm1.ann1.Y38JVD Arachis hypogaea HOM05D003587 ORTHO05D004139 7.3e-21 104.4 64 81.2
Carub.0006s1785 Capsella rubella HOM05D003587 ORTHO05D004139 9.5e-21 104.0 65 76.9
Cc01_g07130 Coffea canephora HOM05D003587 ORTHO05D004139 9.5e-21 104.0 65 78.5
Gohir.D09G106200 Gossypium hirsutum HOM05D003587 ORTHO05D004139 1.6e-20 103.2 64 76.6
Aqoxy1G00052 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 2.1e-20 102.8 63 81.0
Ciclev10018028m.g Citrus clementina HOM05D003587 ORTHO05D004139 2.1e-20 102.8 63 82.5
AT5G19500 Arabidopsis thaliana HOM05D003587 ORTHO05D004139 2.8e-20 102.4 63 79.4
Potri.001G224950 Populus trichocarpa HOM05D003587 ORTHO05D004139 2.8e-20 102.4 128 50.0
TWI59G0614 Tripterygium wilfordii HOM05D003587 ORTHO05D004139 4.7e-20 101.7 64 79.7
Aa31LG1G8880 Aethionema arabicum HOM05D003587 ORTHO05D004139 6.1e-20 101.3 65 75.4
Thhalv10013310m.g Eutrema salsugineum HOM05D003587 ORTHO05D004139 6.1e-20 101.3 65 75.4
Sp6g24900 Schrenkiella parvula HOM05D003587 ORTHO05D004139 6.1e-20 101.3 65 75.4
MD03G1163200 Malus domestica HOM05D003587 ORTHO05D004139 1.0e-19 100.5 61 80.3
AL6G31010 Arabidopsis lyrata HOM05D003587 ORTHO05D004139 1.4e-19 100.1 63 77.8
BcaB05g23382 Brassica carinata HOM05D003587 ORTHO05D004139 1.4e-19 100.1 65 73.8
BcaC03g13680 Brassica carinata HOM05D003587 ORTHO05D004139 1.4e-19 100.1 65 73.8
BNapus_Darmor_BZH_scaffold_38p02370 Brassica napus HOM05D003587 ORTHO05D004139 1.4e-19 100.1 65 73.8
BolC2t06958H Brassica oleracea HOM05D003587 ORTHO05D004139 1.4e-19 100.1 65 73.8
BraA02t05510Z Brassica rapa HOM05D003587 ORTHO05D004139 1.4e-19 100.1 65 73.8
Pp3c11_25650 Physcomitrium patens HOM05D003587 ORTHO05D004139 1.4e-19 100.1 65 69.2
Rhsim13G0203000 Rhododendron simsii HOM05D003587 ORTHO05D004139 1.4e-19 100.1 59 81.4
AagrBONN_evm.TU.Sc2ySwM_344.2860 Anthoceros agrestis HOM05D003587 ORTHO05D004139 4.0e-19 98.6 62 72.6
Oeu025946.1 Olea europaea HOM05D003587 ORTHO05D004139 5.2e-19 98.2 83 65.1
SMO115G0099 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 5.2e-19 98.2 61 72.1
SMO115G0193 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 5.2e-19 98.2 61 72.1
Mapoly0007s0093 Marchantia polymorpha HOM05D003587 ORTHO05D004139 1.5e-18 96.7 62 71.0
AUR62006588 Chenopodium quinoa HOM05D003587 ORTHO05D004139 2.6e-18 95.9 76 67.1
Cpa.g.sc34.195 Carica papaya HOM05D003587 ORTHO05D004139 2.0e-15 86.3 52 80.8
A02p05580 Brassica napus HOM05D003587 ORTHO05D004139 3.5e-15 85.5 92 52.2
Actinidia07008 Actinidia chinensis HOM05D003587 ORTHO05D004139 3.9e-14 82.0 47 83.0
AUR62000241 Chenopodium quinoa HOM05D003587 ORTHO05D004139 7.3e-13 77.8 45 84.4
Lj2A826G17 Lonicera japonica HOM05D003587 ORTHO05D004139 2.1e-12 76.3 46 80.4
Ah.06g194980 Amaranthus hybridus HOM05D003587 ORTHO05D004139 2.0e-10 69.7 42 78.6
PRCOL_00002329 Prasinoderma coloniale HOM05D003587 ORTHO05D004139 2.2e-09 66.2 64 53.1
Cre13.g572200 Chlamydomonas reinhardtii HOM05D003587 ORTHO05D004139 5.4e-08 61.6 49 61.2
MCO13G640 Micromonas commoda HOM05D003587 ORTHO05D004139 1.2e-07 60.5 47 61.7
Peaxi162Scf00234g00315 Petunia axillaris HOM05D003587 ORTHO05D004139 1.6e-07 60.1 55 58.2
Ca_06175_v3 Cicer arietinum L. HOM05D003587 ORTHO05D004139 4.6e-07 58.5 44 68.2
Hma1.2p1_1632F.1_g294660 Hydrangea macrophylla HOM05D003587 ORTHO05D004139 6.0e-07 58.2 33 78.8
unitig_0.g312 Utricularia gibba HOM05D003587 ORTHO05D004139 6.0e-07 58.2 39 74.4
SEGI_26742 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 8.6e-06 54.3 52 44.2
SEGI_29926 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 8.6e-06 54.3 52 44.2


User provided reference genes

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