Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.6e-218 761.9 431 100.0
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 4.5e-178 628.2 378 83.1
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 2.2e-177 625.9 434 75.3
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 3.6e-159 565.5 354 78.5
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 1.3e-156 557.0 374 72.2
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 2.8e-156 555.8 373 72.4
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 4.9e-156 555.1 374 72.2
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 2.4e-155 552.7 374 72.5
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.1e-155 552.0 376 71.8
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 5.4e-155 551.6 371 73.6
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 9.2e-155 550.8 374 72.5
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 9.2e-155 550.8 374 72.5
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.6e-154 550.1 374 72.2
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.6e-154 550.1 374 72.2
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 2.0e-154 549.7 374 72.2
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 2.0e-154 549.7 376 70.7
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 2.0e-154 549.7 374 71.4
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 2.0e-154 549.7 374 71.4
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.0e-154 549.7 374 72.2
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 2.7e-154 549.3 368 73.4
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 2.7e-154 549.3 374 71.4
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.7e-154 549.3 376 71.8
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.5e-154 548.9 374 72.2
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 4.5e-154 548.5 368 73.4
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 4.5e-154 548.5 369 71.5
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 5.9e-154 548.1 374 70.9
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 5.9e-154 548.1 374 70.9
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 1.0e-153 547.4 370 72.2
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.0e-153 547.4 370 72.2
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.3e-153 547.0 374 70.9
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.3e-153 546.2 370 71.9
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.3e-153 546.2 370 71.9
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 2.9e-153 545.8 372 72.0
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 2.9e-153 545.8 374 70.6
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 2.9e-153 545.8 373 70.8
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 3.9e-153 545.4 374 70.9
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.9e-153 545.4 370 71.9
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 3.9e-153 545.4 374 71.1
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 5.0e-153 545.0 368 72.8
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 6.6e-153 544.7 368 73.1
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 6.6e-153 544.7 368 72.8
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 6.6e-153 544.7 374 71.1
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 8.6e-153 544.3 377 70.3
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 8.6e-153 544.3 373 71.0
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.6e-153 544.3 373 71.0
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.1e-152 543.9 373 71.6
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.1e-152 543.9 373 71.0
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.1e-152 543.9 373 70.8
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.5e-152 543.5 374 70.3
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.9e-152 543.1 374 70.3
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.9e-152 543.1 374 70.9
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.9e-152 543.1 370 71.6
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.9e-152 543.1 370 71.6
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.9e-152 543.1 375 71.2
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 1.9e-152 543.1 374 70.3
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.9e-152 543.1 378 70.4
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.5e-152 542.7 370 71.4
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 2.5e-152 542.7 370 70.8
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 2.5e-152 542.7 370 70.8
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 2.5e-152 542.7 370 70.8
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 2.5e-152 542.7 373 71.3
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 2.5e-152 542.7 376 71.0
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.3e-152 542.3 370 71.4
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 3.3e-152 542.3 376 70.2
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 3.3e-152 542.3 374 70.3
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 3.3e-152 542.3 374 70.3
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.3e-152 542.3 373 70.8
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 4.3e-152 542.0 370 71.1
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.6e-152 541.6 374 71.1
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 7.3e-152 541.2 373 70.5
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 9.5e-152 540.8 373 70.2
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 9.5e-152 540.8 374 70.3
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.2e-151 540.4 374 70.9
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.2e-151 540.4 374 70.3
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.2e-151 540.4 374 69.8
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.2e-151 540.4 374 70.3
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.1e-151 539.7 374 70.3
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.1e-151 539.7 374 70.3
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.1e-151 539.7 374 70.9
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 2.1e-151 539.7 374 70.9
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.8e-151 539.3 374 70.9
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 3.6e-151 538.9 373 71.3
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 3.6e-151 538.9 374 70.3
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 3.6e-151 538.9 370 71.4
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 4.7e-151 538.5 376 69.7
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 4.7e-151 538.5 370 71.4
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 4.7e-151 538.5 353 75.4
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 4.7e-151 538.5 376 70.7
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 8.0e-151 537.7 375 69.9
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 8.0e-151 537.7 370 71.1
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.0e-150 537.3 370 71.1
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.0e-150 537.3 373 70.5
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.3e-150 536.2 368 70.9
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 4.0e-150 535.4 370 70.5
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 4.0e-150 535.4 374 70.6
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 5.2e-150 535.0 374 70.3
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 6.8e-150 534.6 363 71.1
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.2e-149 533.9 376 69.9
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.6e-149 532.7 376 69.9
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 3.4e-149 532.3 377 70.6
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 3.4e-149 532.3 376 68.9
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.8e-149 531.6 372 71.0
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 7.5e-149 531.2 370 70.0
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 1.3e-148 530.4 374 69.8
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 2.2e-148 529.6 360 71.4
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.7e-148 528.9 391 67.3
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 5.4e-147 525.0 373 68.4
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 9.2e-147 524.2 374 69.5
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.7e-146 522.7 373 67.8
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 6.0e-146 521.5 357 72.3
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 7.8e-146 521.2 373 68.1
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.0e-145 520.8 371 67.1
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 5.0e-145 518.5 376 68.1
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 1.5e-144 516.9 354 70.1
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.9e-144 516.5 335 74.0
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.9e-144 516.5 355 70.4
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 2.5e-144 516.2 364 69.5
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 5.6e-144 515.0 367 67.3
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 7.3e-144 514.6 378 68.0
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 7.3e-144 514.6 356 71.3
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 9.5e-144 514.2 418 63.2
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.2e-143 513.8 356 71.1
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.8e-142 510.0 335 72.2
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.8e-142 510.0 356 69.9
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 2.0e-141 506.5 354 70.9
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 4.9e-140 501.9 322 75.2
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.9e-140 501.9 377 67.4
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 4.6e-138 495.4 389 66.3
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.0e-137 494.2 379 66.0
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 6.6e-137 491.5 360 66.7
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.3e-134 483.0 372 65.1
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 2.0e-133 479.9 356 68.0
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.2e-132 476.5 380 64.5
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 8.3e-132 474.6 374 64.7
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 1.1e-131 474.2 374 65.0
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 4.1e-131 472.2 403 61.3
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 6.0e-130 468.4 320 71.9
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 1.3e-129 467.2 374 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.8e-127 459.5 385 61.8
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 5.2e-126 455.3 407 60.0
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 6.6e-121 438.3 304 71.1
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.1e-120 437.6 375 62.7
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.1e-119 433.3 425 55.8
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 4.8e-111 405.6 279 71.7
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.4e-110 404.1 347 60.5
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.4e-110 403.3 275 72.4
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.5e-106 389.4 271 70.8
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 4.6e-106 389.0 377 57.0
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.8e-102 377.1 241 74.7
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 5.8e-101 372.1 352 54.8
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.0e-100 371.3 390 51.3
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 7.9e-98 361.7 333 56.8
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.9e-94 348.6 231 72.7
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.1e-91 341.3 389 49.6
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 7.9e-90 335.1 392 49.0
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 1.4e-86 324.3 288 59.0
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.1e-83 314.7 196 77.0
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.3e-80 303.1 211 72.5
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 2.2e-63 247.3 308 44.8
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 2.8e-63 246.9 302 46.4
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 2.4e-62 243.8 278 53.2
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 1.9e-59 234.2 152 73.0
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.2e-58 231.5 222 56.3
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 5.9e-53 212.6 304 41.8
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 8.8e-49 198.7 214 52.3
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.4e-46 190.7 184 56.5
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 5.5e-43 179.5 120 70.8
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.8e-33 146.0 374 30.5
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.1e-25 120.6 75 74.7
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 7.1e-22 109.4 72 72.2
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.8e-17 94.7 67 68.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.2e-15 87.8 77 50.6
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 8.4e-15 85.9 147 42.2
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 2.4e-14 84.3 61 60.7
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 7.1e-14 82.8 64 59.4
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 5.1e-12 76.6 60 63.3
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.9e-11 74.7 70 45.7
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 6.8e-09 66.2 75 46.7
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 3.8e-07 60.5 64 46.9
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 4.9e-07 60.1 63 49.2


User provided reference genes

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