Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 1.3e-70 269.6 139 100.0
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 3.1e-27 125.6 115 63.5
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.5e-10 70.1 108 38.0
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 4.9e-09 65.1 119 41.2
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 2.4e-08 62.8 58 51.7
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 5.4e-08 61.6 57 49.1
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 5.4e-08 61.6 63 47.6
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 7.1e-08 61.2 66 47.0
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 7.1e-08 61.2 107 42.1
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 9.3e-08 60.8 115 40.9
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 9.3e-08 60.8 94 42.6
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 9.3e-08 60.8 44 59.1
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.2e-07 60.5 46 54.3
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 1.6e-07 60.1 62 50.0
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 1.6e-07 60.1 100 39.0
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.1e-07 59.7 95 37.9
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 2.7e-07 59.3 44 59.1
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 3.5e-07 58.9 102 38.2
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 3.5e-07 58.9 102 38.2
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.5e-07 58.9 98 38.8
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 4.6e-07 58.5 43 62.8
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 4.6e-07 58.5 62 43.5
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 4.6e-07 58.5 54 50.0
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 6.0e-07 58.2 60 46.7
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 6.0e-07 58.2 44 54.5
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 7.9e-07 57.8 86 40.7
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 7.9e-07 57.8 61 45.9
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 1.3e-06 57.0 92 41.3
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.3e-06 57.0 89 39.3
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 1.3e-06 57.0 62 45.2
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.7e-06 56.6 102 37.3
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.7e-06 56.6 43 60.5
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 2.3e-06 56.2 57 47.4
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 2.3e-06 56.2 56 48.2
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 2.3e-06 56.2 101 39.6
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 2.3e-06 56.2 65 46.2
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 2.3e-06 56.2 47 53.2
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 3.9e-06 55.5 102 36.3
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 3.9e-06 55.5 102 36.3
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 3.9e-06 55.5 102 36.3
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 3.9e-06 55.5 95 36.8
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.9e-06 55.5 116 34.5
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 5.1e-06 55.1 47 55.3
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 5.1e-06 55.1 88 42.0
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 5.1e-06 55.1 63 46.0
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 6.6e-06 54.7 44 54.5
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 6.6e-06 54.7 107 35.5
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 6.6e-06 54.7 98 36.7
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 8.7e-06 54.3 107 36.4
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 8.7e-06 54.3 56 44.6
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 8.7e-06 54.3 96 40.6
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 8.7e-06 54.3 98 36.7
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 8.7e-06 54.3 121 35.5


User provided reference genes

Program Settings