Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1371.3 693 100.0
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 1231.5 690 90.7
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1179.5 690 85.5
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 1176.0 690 85.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 1173.7 690 85.9
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1173.3 690 85.2
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1172.1 690 85.1
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 1171.4 690 84.6
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 1170.6 690 85.1
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1169.5 690 85.1
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1169.1 690 85.2
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1168.3 690 84.6
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 1167.9 690 85.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 1167.9 690 84.9
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 1167.5 690 84.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1167.1 690 85.1
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1167.1 690 84.9
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 1165.6 690 84.8
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 1165.6 690 84.8
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 1165.2 690 84.8
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1165.2 690 84.8
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1164.8 690 84.8
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 1164.8 690 84.5
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 1164.4 690 84.2
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 1163.7 690 84.6
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1163.7 690 84.6
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1163.7 690 84.3
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1162.9 690 84.2
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1162.9 690 84.2
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 1162.1 690 85.1
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1162.1 690 84.6
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1161.4 690 84.9
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 1161.4 690 84.2
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 1161.4 690 83.9
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 1160.6 690 84.1
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1159.8 690 83.9
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1159.8 690 84.2
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1159.4 690 84.2
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1158.7 690 83.6
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1157.5 690 84.3
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 1157.1 690 84.1
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 1156.7 690 84.5
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1156.7 690 83.0
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 1156.4 690 83.6
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 1156.4 690 84.2
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 1156.4 690 83.3
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1156.0 690 83.6
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 1156.0 690 84.2
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 1155.6 690 84.1
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 1154.8 690 83.8
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 1154.0 690 83.5
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 1153.7 690 82.9
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1153.3 690 84.1
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 1152.5 690 83.2
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1152.1 690 82.9
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1152.1 690 82.8
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1152.1 690 82.8
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1151.0 690 82.8
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 1150.2 690 83.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 1150.2 690 83.2
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1149.4 690 83.0
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 1149.0 690 82.6
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 1148.3 690 82.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 1146.3 690 82.5
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 1146.0 690 82.5
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 1145.6 690 82.2
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 1145.6 690 82.8
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 1145.2 690 82.9
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1145.2 690 82.9
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 1144.8 690 83.2
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1144.8 690 82.9
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 1144.0 690 82.0
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 1143.3 690 82.0
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 1143.3 690 82.6
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 1143.3 690 82.9
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 1143.3 690 82.8
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1143.3 690 83.0
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 1142.9 690 81.9
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 1142.5 678 84.4
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 1142.5 690 82.3
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 1142.5 690 82.0
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1140.6 690 82.6
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 1140.6 690 82.6
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 1140.6 690 82.3
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 1137.9 690 83.5
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1137.9 699 81.8
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 1137.5 690 82.3
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1137.5 690 82.6
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1137.5 690 82.6
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1136.3 690 81.7
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1135.9 690 82.2
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 1135.9 690 82.2
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1135.6 690 81.7
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 1131.3 690 81.0
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 1130.5 690 81.9
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1130.5 690 81.9
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1130.5 690 81.9
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1129.8 690 81.6
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1129.0 690 81.7
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1115.5 751 76.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1114.4 717 78.7
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 1112.4 690 79.9
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 1111.3 690 81.0
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 1106.7 690 81.4
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 1079.7 692 78.2
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 1078.9 690 78.0
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1078.9 690 78.3
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1078.9 690 78.3
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 1078.5 690 78.1
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 1.9e-311 1072.0 652 83.1
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 8.9e-293 1010.0 596 84.9
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 1.6e-289 999.2 595 83.9
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 1.3e-288 996.1 594 85.0
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 2.5e-279 965.3 681 73.3
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 2.7e-273 945.3 696 68.8
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 5.1e-272 941.0 696 68.7
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 5.2e-261 904.4 675 70.7
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 1.4e-245 853.2 675 68.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 1.8e-216 756.5 456 81.4
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 1.1e-210 737.3 444 81.5
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 7.9e-124 448.7 258 88.4
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 8.2e-121 438.7 280 78.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 8.2e-97 359.0 721 32.7
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.4e-80 305.1 825 28.2
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 1.3e-73 282.0 408 40.4
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.8e-64 251.5 146 85.6
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.1e-51 209.1 507 32.0
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 9.9e-42 176.0 107 82.2
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 6.6e-38 163.3 94 84.0
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 1.8e-27 128.6 65 89.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 5.3e-27 127.1 71 81.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 2.7e-23 114.8 91 67.0
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 3.5e-23 114.4 99 61.6
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 4.2e-08 64.3 63 50.8


User provided reference genes

Program Settings