Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0656400 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 0.0e+00 1443.3 731 100.0
Zm00001eb329540 Zea mays HOM05D003650 ORTHO05D004213 0.0e+00 1188.7 725 77.8
Zm00001eb287230 Zea mays HOM05D003650 ORTHO05D004213 4.8e-273 944.5 695 66.0
HPP92_010728 Vanilla planifolia HOM05D003650 ORTHO05D004213 5.4e-248 861.3 689 59.4
TAR636G3054 Trochodendron aralioides HOM05D003650 ORTHO05D004213 2.7e-247 859.0 687 59.0
Hma1.2p1_2002F.1_g310720 Hydrangea macrophylla HOM05D003650 ORTHO05D004213 2.3e-246 855.9 688 58.9
TAR633G1518 Trochodendron aralioides HOM05D003650 ORTHO05D004213 3.0e-246 855.5 689 58.8
SalBow6G5443 Salvia bowleyana HOM05D003650 ORTHO05D004213 3.9e-246 855.1 688 59.2
CANSAT80G0970 Cannabis sativa HOM05D003650 ORTHO05D004213 1.1e-245 853.6 690 59.0
VMungo0720G2955 Vigna mungo HOM05D003650 ORTHO05D004213 9.5e-245 850.5 690 59.3
Aqoxy2G00151 Aquilegia oxysepala HOM05D003650 ORTHO05D004213 3.6e-244 848.6 688 59.3
Lj2A385G21 Lonicera japonica HOM05D003650 ORTHO05D004213 3.6e-244 848.6 687 58.7
Peaxi162Scf00130g00016 Petunia axillaris HOM05D003650 ORTHO05D004213 3.6e-244 848.6 689 58.3
Manes.09G021900 Manihot esculenta HOM05D003650 ORTHO05D004213 6.2e-244 847.8 694 58.5
QL07p000311 Quercus lobata HOM05D003650 ORTHO05D004213 6.8e-243 844.3 689 58.6
PGSC0003DMG400027249 Solanum tuberosum HOM05D003650 ORTHO05D004213 6.8e-243 844.3 691 58.5
Thecc.05G153700 Theobroma cacao HOM05D003650 ORTHO05D004213 6.8e-243 844.3 690 58.7
MSTRG.6431 Avicennia marina HOM05D003650 ORTHO05D004213 2.0e-242 842.8 685 58.2
CSS0010444 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 2.0e-242 842.8 690 58.4
Sopen04g007820 Solanum pennellii HOM05D003650 ORTHO05D004213 2.0e-242 842.8 691 58.0
Nitab4.5_0005195g0070 Nicotiana tabacum HOM05D003650 ORTHO05D004213 2.6e-242 842.4 688 58.1
Eucgr.A02349 Eucalyptus grandis HOM05D003650 ORTHO05D004213 3.4e-242 842.0 686 59.3
Glyma.02G184100 Glycine max HOM05D003650 ORTHO05D004213 3.4e-242 842.0 690 58.6
Oeu008162.1 Olea europaea HOM05D003650 ORTHO05D004213 3.4e-242 842.0 681 59.3
PSO384G3418 Papaver somniferum HOM05D003650 ORTHO05D004213 3.4e-242 842.0 688 58.1
Psat6g120000 Pisum sativum HOM05D003650 ORTHO05D004213 5.8e-242 841.3 687 58.7
Phvul.007G252800 Phaseolus vulgaris HOM05D003650 ORTHO05D004213 9.8e-242 840.5 690 58.0
Lj5g0024914 Lotus japonicus HOM05D003650 ORTHO05D004213 1.7e-241 839.7 687 58.8
TWI77G0711 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 1.7e-241 839.7 688 58.3
PSO339G5560 Papaver somniferum HOM05D003650 ORTHO05D004213 2.2e-241 839.3 688 58.3
Duzib128G1026 Durio zibethinus HOM05D003650 ORTHO05D004213 2.9e-241 839.0 689 58.2
Glyma.10G097600 Glycine max HOM05D003650 ORTHO05D004213 2.9e-241 839.0 687 58.4
Duzib093G1511 Durio zibethinus HOM05D003650 ORTHO05D004213 4.9e-241 838.2 686 58.3
Manes.08G050700 Manihot esculenta HOM05D003650 ORTHO05D004213 4.9e-241 838.2 694 57.8
TWI74G1194 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 4.9e-241 838.2 688 58.1
DCAR_013601 Daucus carota HOM05D003650 ORTHO05D004213 6.4e-241 837.8 688 57.8
Lalb_Chr06g0173451 Lupinus albus HOM05D003650 ORTHO05D004213 8.3e-241 837.4 687 58.1
COL.COLO4_28278 Corchorus olitorius HOM05D003650 ORTHO05D004213 1.4e-240 836.6 689 58.5
Ca_26017_v3 Cicer arietinum L. HOM05D003650 ORTHO05D004213 1.9e-240 836.3 687 57.8
MD12G1073600 Malus domestica HOM05D003650 ORTHO05D004213 1.9e-240 836.3 668 59.1
arahy.Tifrunner.gnm1.ann1.MS35EQ Arachis hypogaea HOM05D003650 ORTHO05D004213 2.4e-240 835.9 687 57.9
PGR004G2044 Punica granatum HOM05D003650 ORTHO05D004213 2.4e-240 835.9 684 57.7
CAN.G676.68 Capsicum annuum HOM05D003650 ORTHO05D004213 5.4e-240 834.7 697 57.2
Migut.J01760 Erythranthe guttata HOM05D003650 ORTHO05D004213 5.4e-240 834.7 685 57.7
arahy.Tifrunner.gnm1.ann1.YDMB1U Arachis hypogaea HOM05D003650 ORTHO05D004213 7.0e-240 834.3 687 57.8
Prupe.7G061300 Prunus persica HOM05D003650 ORTHO05D004213 1.2e-239 833.6 672 59.2
TPR.G10642 Trifolium pratense HOM05D003650 ORTHO05D004213 1.2e-239 833.6 687 57.8
Nitab4.5_0010636g0040 Nicotiana tabacum HOM05D003650 ORTHO05D004213 1.6e-239 833.2 708 55.9
MD14G1071900 Malus domestica HOM05D003650 ORTHO05D004213 2.7e-239 832.4 671 59.0
Duzib205G0897 Durio zibethinus HOM05D003650 ORTHO05D004213 6.0e-239 831.2 689 57.6
Actinidia09330 Actinidia chinensis HOM05D003650 ORTHO05D004213 1.0e-238 830.5 687 57.6
Cpa.g.sc92.50 Carica papaya HOM05D003650 ORTHO05D004213 1.3e-238 830.1 686 57.7
HanXRQChr10g0288771 Helianthus annuus HOM05D003650 ORTHO05D004213 1.3e-238 830.1 687 58.4
Gohir.A09G122300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 3.0e-238 828.9 690 57.2
Gorai.006G136600 Gossypium raimondii HOM05D003650 ORTHO05D004213 6.6e-238 827.8 690 57.4
EL10Ac3g07088 Beta vulgaris HOM05D003650 ORTHO05D004213 8.6e-238 827.4 686 57.0
ClCG10G016580 Citrullus lanatus HOM05D003650 ORTHO05D004213 1.1e-237 827.0 694 56.9
Lsat_1_v5_gn_9_29041 Lactuca sativa HOM05D003650 ORTHO05D004213 1.1e-237 827.0 685 57.5
Hund19149 Selenicereus undatus HOM05D003650 ORTHO05D004213 1.5e-237 826.6 687 57.5
SGA_v2.0_scaffold69G23114 Striga asiatica HOM05D003650 ORTHO05D004213 1.5e-237 826.6 687 57.8
RcHm_v2.0_Chr3g0482321 Rosa chinensis HOM05D003650 ORTHO05D004213 2.5e-237 825.9 671 58.7
Sed0014274 Sechium edule HOM05D003650 ORTHO05D004213 4.3e-237 825.1 690 56.7
CiPaw.10G033200 Carya illinoinensis HOM05D003650 ORTHO05D004213 5.6e-237 824.7 691 57.2
Gohir.A09G122200 Gossypium hirsutum HOM05D003650 ORTHO05D004213 1.2e-236 823.5 690 57.0
CiPaw.09G038100 Carya illinoinensis HOM05D003650 ORTHO05D004213 1.6e-236 823.2 690 57.0
Ah.13g076450 Amaranthus hybridus HOM05D003650 ORTHO05D004213 2.8e-236 822.4 686 56.6
MELO3C009717.2 Cucumis melo HOM05D003650 ORTHO05D004213 3.6e-236 822.0 694 56.6
Sabra16G0058400 Salix brachista HOM05D003650 ORTHO05D004213 4.7e-236 821.6 685 57.1
vmacro07855 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 4.7e-236 821.6 686 56.3
BolC3t15166H Brassica oleracea HOM05D003650 ORTHO05D004213 6.2e-236 821.2 689 56.2
Gohir.D09G118400 Gossypium hirsutum HOM05D003650 ORTHO05D004213 8.1e-236 820.8 690 56.8
GSVIVG01033278001 Vitis vinifera HOM05D003650 ORTHO05D004213 8.1e-236 820.8 683 57.8
AUR62026036 Chenopodium quinoa HOM05D003650 ORTHO05D004213 1.1e-235 820.5 686 56.9
C03p27940 Brassica napus HOM05D003650 ORTHO05D004213 1.4e-235 820.1 689 56.0
Cc06_g17090 Coffea canephora HOM05D003650 ORTHO05D004213 2.3e-235 819.3 663 58.2
CDE07G0124 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 3.1e-235 818.9 689 56.2
THA.LOC104802108 Tarenaya hassleriana HOM05D003650 ORTHO05D004213 3.1e-235 818.9 691 56.3
AT2G41770 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 5.2e-235 818.1 689 55.4
Potri.016G055700 Populus trichocarpa HOM05D003650 ORTHO05D004213 5.2e-235 818.1 685 56.9
Sabra06G0035700 Salix brachista HOM05D003650 ORTHO05D004213 5.2e-235 818.1 686 57.4
Potri.006G051000 Populus trichocarpa HOM05D003650 ORTHO05D004213 6.8e-235 817.8 685 57.5
BraA03t11559Z Brassica rapa HOM05D003650 ORTHO05D004213 1.2e-234 817.0 689 55.9
AUR62024446 Chenopodium quinoa HOM05D003650 ORTHO05D004213 1.2e-234 817.0 686 56.9
Ciclev10004391m.g Citrus clementina HOM05D003650 ORTHO05D004213 1.2e-234 817.0 686 57.0
A03p23420 Brassica napus HOM05D003650 ORTHO05D004213 1.5e-234 816.6 689 55.9
BcaNung02835 Brassica carinata HOM05D003650 ORTHO05D004213 2.0e-234 816.2 686 56.3
Sc13g0001770 Simmondsia chinensis HOM05D003650 ORTHO05D004213 2.0e-234 816.2 689 57.5
Lalb_Chr20g0110481 Lupinus albus HOM05D003650 ORTHO05D004213 5.8e-234 814.7 692 57.1
FAN05G4085 Fragaria x ananassa HOM05D003650 ORTHO05D004213 9.8e-234 813.9 671 57.7
BraA05t19245Z Brassica rapa HOM05D003650 ORTHO05D004213 1.3e-233 813.5 686 56.0
Nn7g36273 Nelumbo nucifera HOM05D003650 ORTHO05D004213 1.7e-233 813.1 687 56.8
Sp4g24040 Schrenkiella parvula HOM05D003650 ORTHO05D004213 1.7e-233 813.1 689 55.7
ECA247G3671 Erigeron canadensis HOM05D003650 ORTHO05D004213 2.2e-233 812.8 687 56.0
Thhalv10016286m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 2.2e-233 812.8 689 55.6
FAN09G0940 Fragaria x ananassa HOM05D003650 ORTHO05D004213 2.2e-233 812.8 671 57.7
FAN14G5543 Fragaria x ananassa HOM05D003650 ORTHO05D004213 3.7e-233 812.0 671 57.7
AT3G57420 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 4.9e-233 811.6 690 55.8
FvH4_6g23790 Fragaria vesca HOM05D003650 ORTHO05D004213 4.9e-233 811.6 671 57.5
Actinidia39226 Actinidia chinensis HOM05D003650 ORTHO05D004213 6.4e-233 811.2 635 60.2
Carub.0004s2405 Capsella rubella HOM05D003650 ORTHO05D004213 6.4e-233 811.2 689 55.0
A05p02520 Brassica napus HOM05D003650 ORTHO05D004213 8.3e-233 810.8 686 55.8
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 8.3e-233 810.8 684 56.0
Carub.0005s2426 Capsella rubella HOM05D003650 ORTHO05D004213 8.3e-233 810.8 690 55.9
AL4G40080 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.1e-232 810.4 689 55.2
AL5G38950 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.1e-232 810.4 690 55.9
C04p02980 Brassica napus HOM05D003650 ORTHO05D004213 1.1e-232 810.4 686 55.8
Sp5g05180 Schrenkiella parvula HOM05D003650 ORTHO05D004213 1.1e-232 810.4 690 55.5
FAN02G1020 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.4e-232 810.1 671 57.4
CARHR136860 Cardamine hirsuta HOM05D003650 ORTHO05D004213 3.2e-232 808.9 689 55.3
Atru.chr1.1095 Acer truncatum HOM05D003650 ORTHO05D004213 7.1e-232 807.7 611 62.8
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.2e-231 807.0 686 56.4
Thhalv10005801m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 2.1e-231 806.2 690 55.8
Aa31LG1G23780 Aethionema arabicum HOM05D003650 ORTHO05D004213 4.6e-231 805.1 689 54.7
Ah.04g151780 Amaranthus hybridus HOM05D003650 ORTHO05D004213 1.7e-230 803.1 700 55.4
CARHR167620 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.7e-230 803.1 692 54.9
CSS0035654 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 3.0e-230 802.4 700 54.9
ATR0626G026 Amborella trichopoda HOM05D003650 ORTHO05D004213 8.6e-230 800.8 684 56.7
Rhsim07G0058200 Rhododendron simsii HOM05D003650 ORTHO05D004213 7.3e-229 797.7 686 55.8
CSS0046501 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 1.2e-228 797.0 700 54.4
vmacro13691 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 3.6e-228 795.4 692 55.2
Haze_19859 Corylus avellana HOM05D003650 ORTHO05D004213 1.8e-227 793.1 768 51.3
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 2.0e-226 789.6 676 56.1
CANSAT80G1317 Cannabis sativa HOM05D003650 ORTHO05D004213 2.9e-225 785.8 619 59.6
Prupe.2G020200 Prunus persica HOM05D003650 ORTHO05D004213 4.9e-225 785.0 686 54.7
HanXRQChr01g0008741 Helianthus annuus HOM05D003650 ORTHO05D004213 1.1e-224 783.9 686 53.5
Nitab4.5_0000707g0190 Nicotiana tabacum HOM05D003650 ORTHO05D004213 1.1e-224 783.9 689 55.7
ECA248G2213 Erigeron canadensis HOM05D003650 ORTHO05D004213 1.4e-224 783.5 689 53.4
FAN06G0077 Fragaria x ananassa HOM05D003650 ORTHO05D004213 2.4e-224 782.7 687 55.2
RcHm_v2.0_Chr1g0317301 Rosa chinensis HOM05D003650 ORTHO05D004213 2.4e-224 782.7 687 55.7
FvH4_7g01460 Fragaria vesca HOM05D003650 ORTHO05D004213 6.0e-223 778.1 687 55.0
Nitab4.5_0008441g0020 Nicotiana tabacum HOM05D003650 ORTHO05D004213 6.0e-223 778.1 689 55.2
CANSAT80G2225 Cannabis sativa HOM05D003650 ORTHO05D004213 1.3e-222 776.9 690 55.7
Rhsim03G0022300 Rhododendron simsii HOM05D003650 ORTHO05D004213 1.9e-221 773.1 757 50.6
MD07G1018300 Malus domestica HOM05D003650 ORTHO05D004213 8.1e-220 767.7 686 53.4
Peaxi162Scf00694g00117 Petunia axillaris HOM05D003650 ORTHO05D004213 1.1e-219 767.3 689 54.3
CAN.G219.62 Capsicum annuum HOM05D003650 ORTHO05D004213 6.8e-219 764.6 673 55.9
Cc02_g29000 Coffea canephora HOM05D003650 ORTHO05D004213 8.9e-219 764.2 691 54.0
Sopen01g034570 Solanum pennellii HOM05D003650 ORTHO05D004213 8.9e-219 764.2 683 55.1
Solyc01g087600.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 1.2e-218 763.8 683 54.9
Solyc04g015740.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 7.6e-218 761.1 688 53.5
Lsat_1_v5_gn_5_161461 Lactuca sativa HOM05D003650 ORTHO05D004213 1.7e-217 760.0 686 53.4
SEGI_32089 Sequoiadendron giganteum HOM05D003650 ORTHO05D004213 2.2e-217 759.6 689 52.2
PGSC0003DMG400006853 Solanum tuberosum HOM05D003650 ORTHO05D004213 9.3e-216 754.2 706 53.4
Rhsim03G0021200 Rhododendron simsii HOM05D003650 ORTHO05D004213 6.0e-215 751.5 831 46.3
Oeu027406.1 Olea europaea HOM05D003650 ORTHO05D004213 2.5e-213 746.1 670 54.6
Lju124C41T4 Lonicera japonica HOM05D003650 ORTHO05D004213 1.3e-212 743.8 611 58.6
Gohir.D09G118300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 3.8e-209 732.3 543 62.2
Nn2g15253 Nelumbo nucifera HOM05D003650 ORTHO05D004213 1.5e-202 710.3 531 63.1
Sed0006713 Sechium edule HOM05D003650 ORTHO05D004213 2.0e-202 709.9 694 51.2
ClCG09G003920 Citrullus lanatus HOM05D003650 ORTHO05D004213 3.4e-202 709.1 688 52.0
MELO3C023570.2 Cucumis melo HOM05D003650 ORTHO05D004213 9.9e-202 707.6 693 50.8
FAN10G4002 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.3e-201 707.2 687 52.0
Dinv12480 Davidia involucrata HOM05D003650 ORTHO05D004213 2.2e-201 706.4 528 62.3
CsaV3_7G030820 Cucumis sativus L. HOM05D003650 ORTHO05D004213 2.4e-200 703.0 693 50.6
Dinv09321 Davidia involucrata HOM05D003650 ORTHO05D004213 4.9e-193 678.7 529 59.7
Os05g0391200 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 1.4e-192 677.2 456 68.6
CDE11G0464 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 6.3e-188 661.8 640 50.2
Medtr0121s0010 Medicago truncatula HOM05D003650 ORTHO05D004213 9.0e-179 631.3 488 61.9
Oeu023110.1 Olea europaea HOM05D003650 ORTHO05D004213 1.2e-178 630.9 483 61.7
Pp3c14_20380 Physcomitrium patens HOM05D003650 ORTHO05D004213 1.2e-175 620.9 690 42.6
Gorai.006G136700 Gossypium raimondii HOM05D003650 ORTHO05D004213 6.7e-174 615.1 691 46.5
Pp3c17_18550 Physcomitrium patens HOM05D003650 ORTHO05D004213 7.4e-173 611.7 692 42.3
SMO329G0078 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 5.7e-165 585.5 662 44.1
Mapoly0004s0304 Marchantia polymorpha HOM05D003650 ORTHO05D004213 3.1e-163 579.7 664 42.2
GSVIVG01032164001 Vitis vinifera HOM05D003650 ORTHO05D004213 2.0e-154 550.4 444 57.7
SMO165G0114 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 6.5e-153 545.4 637 43.5
CsaV3_3G039750 Cucumis sativus L. HOM05D003650 ORTHO05D004213 5.2e-150 535.8 422 59.2
Sed0014161 Sechium edule HOM05D003650 ORTHO05D004213 2.0e-149 533.9 621 45.9
Dinv39600 Davidia involucrata HOM05D003650 ORTHO05D004213 3.5e-138 496.5 687 41.2
unitig_26.g9048 Utricularia gibba HOM05D003650 ORTHO05D004213 6.0e-106 389.4 340 54.7
BcaNung06246 Brassica carinata HOM05D003650 ORTHO05D004213 1.3e-105 388.3 321 58.3
unitig_26.g9047 Utricularia gibba HOM05D003650 ORTHO05D004213 5.6e-80 303.1 281 54.1
CDE11G0341 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 3.2e-67 260.8 186 63.4
AL4G39870 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.3e-63 248.8 167 67.7
Actinidia02535 Actinidia chinensis HOM05D003650 ORTHO05D004213 1.0e-52 212.6 608 26.6
CARHR167370 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.7e-52 211.8 138 68.8
CDE11G0987 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 2.9e-52 211.1 132 68.9
AL4G39860 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.1e-43 182.6 204 47.1
Oeu022754.1 Olea europaea HOM05D003650 ORTHO05D004213 1.1e-30 139.4 137 49.6
Cre06.g260650 Chlamydomonas reinhardtii HOM05D003650 ORTHO05D004213 1.4e-25 122.5 362 31.2
CARHR167380 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.3e-23 115.9 93 61.3
Actinidia19412 Actinidia chinensis HOM05D003650 ORTHO05D004213 1.7e-23 115.5 93 59.1
Lalb_Chr21g0316481 Lupinus albus HOM05D003650 ORTHO05D004213 3.7e-23 114.4 117 51.3
CDE06G0299 Ceratophyllum demersum HOM05D000016 ORTHO05D000487 2.4e-22 111.7 68 67.6
Cre18.g748697 Chlamydomonas reinhardtii HOM05D003650 ORTHO05D004213 9.5e-19 99.8 319 29.8
Rhsim03G0147000 Rhododendron simsii HOM05D003650 ORTHO05D004213 4.1e-14 84.3 70 60.0
RhsimUnG0102900 Rhododendron simsii HOM05D002707 ORTHO05D002925 3.9e-12 77.8 58 65.5


User provided reference genes

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