Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0656300 Oryza sativa ssp. japonica HOM05D022794 ORTHO05D023027 8.0e-100 367.5 239 100.0
Zm00001eb329530 Zea mays HOM05D022794 ORTHO05D023027 1.7e-57 226.9 218 63.8
Zm00001eb110620 Zea mays HOM05D022794 ORTHO05D023027 1.3e-36 157.5 204 55.4
Zm00001eb240470 Zea mays HOM05D022794 ORTHO05D023027 2.8e-12 76.6 114 43.9
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 6.3e-12 75.5 58 62.1
Glyma.02G183950 Glycine max HOM05D007490 ORTHO05D008750 5.9e-10 68.9 76 52.6
Ciclev10005740m.g Citrus clementina HOM05D007490 ORTHO05D008750 1.3e-09 67.8 186 32.3
Thecc.05G153900 Theobroma cacao HOM05D007490 ORTHO05D008750 1.3e-09 67.8 190 31.1
Hma1.2p1_2266F.1_g318420 Hydrangea macrophylla HOM05D007490 ORTHO05D008750 1.7e-09 67.4 65 56.9
Nn7g36272 Nelumbo nucifera HOM05D007490 ORTHO05D008750 1.7e-09 67.4 196 36.2
COL.COLO4_28277 Corchorus olitorius HOM05D007490 ORTHO05D008750 2.2e-09 67.0 181 30.4
Atru.chr1.1094 Acer truncatum HOM05D007490 ORTHO05D008750 5.0e-09 65.9 195 30.3
Rhsim03G0022200 Rhododendron simsii HOM05D007490 ORTHO05D008750 6.5e-09 65.5 65 53.8
TWI74G0148 Tripterygium wilfordii HOM05D007490 ORTHO05D008750 6.5e-09 65.5 66 54.5
Gohir.D11G329000 Gossypium hirsutum HOM05D007490 ORTHO05D008750 2.5e-08 63.5 181 30.9
Cc06_g17080 Coffea canephora HOM05D007490 ORTHO05D008750 3.2e-08 63.2 69 52.2
Duzib128G0116 Durio zibethinus HOM05D007490 ORTHO05D008750 3.2e-08 63.2 176 29.0
Gorai.007G360400 Gossypium raimondii HOM05D007490 ORTHO05D008750 3.2e-08 63.2 181 30.9
PSO339G3404 Papaver somniferum HOM05D007490 ORTHO05D008750 3.2e-08 63.2 62 59.7
Gohir.A11G312500 Gossypium hirsutum HOM05D007490 ORTHO05D008750 5.5e-08 62.4 178 30.3
Rhsim03G0021300 Rhododendron simsii HOM05D007490 ORTHO05D008750 9.4e-08 61.6 197 31.0
Lsat_1_v5_gn_8_81320 Lactuca sativa HOM05D007490 ORTHO05D008750 2.1e-07 60.5 220 30.5
Nitab4.5_0005611g0010 Nicotiana tabacum HOM05D007490 ORTHO05D008750 2.1e-07 60.5 76 47.4
Eucgr.A02350 Eucalyptus grandis HOM05D007490 ORTHO05D008750 2.7e-07 60.1 74 45.9
Sopen04g007810 Solanum pennellii HOM05D007490 ORTHO05D008750 2.7e-07 60.1 64 51.6
Aqoxy5G00272 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 3.6e-07 59.7 67 52.2
Solyc04g015730.3 Solanum lycopersicum HOM05D007490 ORTHO05D008750 3.6e-07 59.7 63 52.4
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 3.6e-07 59.7 63 52.4
DCAR_013600 Daucus carota HOM05D007490 ORTHO05D008750 6.1e-07 58.9 182 27.5
MD12G1073500 Malus domestica HOM05D007490 ORTHO05D008750 1.4e-06 57.8 201 28.9
Thhalv10017790m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 1.8e-06 57.4 82 42.7
MD14G1067100 Malus domestica HOM05D007490 ORTHO05D008750 1.8e-06 57.4 65 49.2
Manes.09G021650 Manihot esculenta HOM05D007490 ORTHO05D008750 2.3e-06 57.0 176 30.7
Sc13g0001780 Simmondsia chinensis HOM05D007490 ORTHO05D008750 2.3e-06 57.0 74 45.9
C03p27950 Brassica napus HOM05D007490 ORTHO05D008750 3.0e-06 56.6 73 41.1
CsaV3_4G011720 Cucumis sativus L. HOM05D007490 ORTHO05D008750 3.0e-06 56.6 63 50.8
FAN09G1636 Fragaria x ananassa HOM05D007490 ORTHO05D008750 3.9e-06 56.2 69 46.4
Sopen10g030750 Solanum pennellii HOM05D015445 ORTHO05D008750 3.9e-06 56.2 65 49.2
ECA236G0950 Erigeron canadensis HOM05D007490 ORTHO05D008750 5.1e-06 55.8 63 49.2
FvH4_6g23771 Fragaria vesca HOM05D007490 ORTHO05D008750 5.1e-06 55.8 69 46.4
FAN14G3182 Fragaria x ananassa HOM05D007490 ORTHO05D008750 5.1e-06 55.8 69 46.4
Sed0009481 Sechium edule HOM05D007490 ORTHO05D008750 5.1e-06 55.8 61 49.2
SEGI_37898 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 5.1e-06 55.8 77 44.2
Aqoxy3G01571 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 6.7e-06 55.5 65 52.3
BraA03t11560Z Brassica rapa HOM05D007490 ORTHO05D008750 6.7e-06 55.5 181 29.3
Sabra06G0035600 Salix brachista HOM05D007490 ORTHO05D008750 6.7e-06 55.5 73 45.2
SalBow3G0554 Salvia bowleyana HOM05D007490 ORTHO05D008750 6.7e-06 55.5 65 44.6
unitig_0.g2659 Utricularia gibba HOM05D007490 ORTHO05D008750 6.7e-06 55.5 65 47.7
AUR62024445 Chenopodium quinoa HOM05D007490 ORTHO05D008750 8.8e-06 55.1 67 46.3
AUR62026035 Chenopodium quinoa HOM05D007490 ORTHO05D008750 8.8e-06 55.1 67 46.3
ClCG00G005730 Citrullus lanatus HOM05D007490 ORTHO05D008750 8.8e-06 55.1 61 49.2
Prupe.7G061400 Prunus persica HOM05D007490 ORTHO05D008750 8.8e-06 55.1 63 47.6
QL07p000297 Quercus lobata HOM05D007490 ORTHO05D008750 8.8e-06 55.1 192 31.2


User provided reference genes

Program Settings