Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.6e-280 968.8 499 100.0
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 3.7e-232 808.1 499 82.2
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 2.9e-229 798.5 500 81.0
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 3.0e-157 559.3 501 60.7
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 2.1e-134 483.4 506 53.2
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 1.1e-130 471.1 515 53.0
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.5e-129 467.2 513 52.4
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 2.2e-128 463.4 515 50.5
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 6.5e-128 461.8 510 51.6
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 1.4e-127 460.7 514 51.4
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 3.9e-125 452.6 513 49.3
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 2.5e-124 449.9 513 49.7
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.4e-122 444.1 519 49.5
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.2e-121 441.0 515 48.9
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 1.5e-121 440.7 512 49.2
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 5.0e-120 435.6 518 48.6
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.1e-119 434.5 512 47.9
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.4e-119 434.1 514 49.4
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 2.5e-119 433.3 514 48.6
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 4.2e-119 432.6 515 48.2
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 7.2e-119 431.8 511 47.9
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 4.7e-118 429.1 516 47.7
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.9e-118 428.3 513 47.8
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.0e-117 427.9 513 47.2
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 1.8e-117 427.2 518 49.0
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 1.8e-117 427.2 518 49.0
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.0e-117 426.4 514 48.4
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 3.9e-117 426.0 513 47.0
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.9e-117 426.0 513 47.4
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 6.7e-117 425.2 513 47.8
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 1.1e-116 424.5 513 48.5
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 1.1e-116 424.5 513 46.4
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.6e-116 423.3 514 48.4
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 2.6e-116 423.3 514 48.4
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 2.6e-116 423.3 514 48.1
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 9.7e-116 421.4 512 47.7
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 1.3e-115 421.0 513 48.0
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 3.7e-115 419.5 515 47.8
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 3.7e-115 419.5 517 47.2
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 4.8e-115 419.1 496 49.0
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 8.2e-115 418.3 516 48.1
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 1.8e-114 417.2 516 47.7
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 1.8e-114 417.2 514 48.2
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 2.4e-114 416.8 511 47.7
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 4.1e-114 416.0 514 48.2
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 5.3e-114 415.6 566 46.5
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 9.1e-114 414.8 517 47.6
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 1.5e-113 414.1 514 45.7
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 2.0e-113 413.7 514 47.5
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 3.5e-113 412.9 508 48.0
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 3.5e-113 412.9 514 48.2
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 4.5e-113 412.5 514 48.4
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 1.0e-112 411.4 514 48.8
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 1.0e-112 411.4 509 47.2
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 2.2e-112 410.2 514 49.2
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 6.5e-112 408.7 509 47.5
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 6.5e-112 408.7 512 46.1
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 1.1e-111 407.9 515 46.6
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 1.1e-111 407.9 509 45.2
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 1.5e-111 407.5 506 47.2
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 3.2e-111 406.4 526 47.0
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 3.2e-111 406.4 526 47.3
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 4.2e-111 406.0 508 47.6
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 4.2e-111 406.0 508 46.7
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 5.5e-111 405.6 524 46.4
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 9.4e-111 404.8 508 47.6
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 1.6e-110 404.1 512 46.9
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 3.6e-110 402.9 515 46.4
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 1.8e-109 400.6 516 45.9
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 3.0e-109 399.8 512 45.5
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 4.0e-109 399.4 513 46.4
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 5.2e-109 399.1 512 45.3
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 6.7e-109 398.7 512 46.3
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 8.8e-109 398.3 519 46.2
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 1.1e-108 397.9 514 45.5
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 1.1e-108 397.9 513 45.8
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 1.1e-108 397.9 515 47.0
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 1.1e-108 397.9 508 46.5
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 2.0e-108 397.1 535 45.6
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.6e-108 396.7 512 45.9
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 4.4e-108 396.0 515 46.0
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 4.4e-108 396.0 566 46.6
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 7.5e-108 395.2 512 45.9
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 9.7e-108 394.8 510 46.1
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 1.3e-107 394.4 515 45.8
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 1.3e-107 394.4 505 45.1
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.8e-106 390.6 518 44.4
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 2.4e-106 390.2 506 47.0
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 3.1e-106 389.8 510 45.5
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 4.1e-106 389.4 513 45.2
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 2.0e-105 387.1 511 45.0
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 4.5e-105 386.0 510 45.5
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 2.9e-104 383.3 515 45.2
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 8.5e-104 381.7 512 45.1
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 8.5e-104 381.7 513 45.2
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 1.1e-103 381.3 522 45.6
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 1.1e-103 381.3 514 44.7
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 4.7e-102 375.9 517 44.7
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 8.0e-102 375.2 524 44.7
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 1.4e-101 374.4 520 43.7
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 2.3e-101 373.6 521 44.3
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 2.3e-101 373.6 521 44.0
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 4.0e-101 372.9 509 45.0
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 8.8e-101 371.7 516 44.2
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 1.5e-100 370.9 523 44.4
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 1.5e-100 370.9 523 44.4
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.0e-100 370.5 523 43.8
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 2.6e-100 370.2 520 44.8
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 4.4e-100 369.4 523 42.8
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 4.4e-100 369.4 520 44.4
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 4.4e-100 369.4 520 44.4
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 4.4e-100 369.4 523 45.7
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 9.8e-100 368.2 521 42.8
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 1.3e-99 367.9 499 44.5
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 1.7e-99 367.5 520 44.4
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 1.8e-98 364.0 526 42.8
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.8e-98 364.0 517 43.9
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 2.4e-98 363.6 510 45.9
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 1.2e-94 351.3 526 42.6
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 2.7e-94 350.1 511 44.4
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 3.6e-94 349.7 529 42.7
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 6.1e-94 349.0 529 42.2
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 1.0e-93 348.2 526 42.8
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 1.0e-93 348.2 526 42.8
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 3.0e-93 346.7 532 41.5
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 4.0e-93 346.3 514 45.1
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 4.4e-92 342.8 500 43.4
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 7.5e-92 342.0 519 43.4
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 2.8e-91 340.1 518 42.1
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 1.1e-90 338.2 519 43.2
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 3.1e-90 336.7 442 45.2
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.2e-89 334.7 513 43.5
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 4.5e-89 332.8 508 42.7
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 1.1e-87 328.2 434 45.4
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 5.6e-87 325.9 511 41.1
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.4e-85 321.2 512 41.4
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.2e-84 318.2 525 40.0
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 4.9e-83 312.8 524 39.9
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 9.2e-82 308.5 524 40.5
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 5.9e-81 305.8 527 40.8
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 5.4e-74 282.7 504 39.9
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 3.1e-69 266.9 362 43.6
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 5.1e-64 249.6 248 52.4
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 1.8e-61 241.1 466 36.5
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 2.9e-59 233.8 247 51.0
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.1e-53 215.3 472 32.8
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 2.1e-46 191.0 519 32.2
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 3.1e-45 187.2 550 32.0
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 4.0e-45 186.8 271 40.6
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 1.5e-44 184.9 223 49.8
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 1.8e-37 161.4 346 34.1
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 3.4e-36 157.1 248 40.3
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 1.3e-27 128.6 108 57.4
GSVIVG01026827001 Vitis vinifera HOM05D003460 ORTHO05D004277 3.0e-24 117.5 263 34.6
TPR.G701 Trifolium pratense HOM05D003460 ORTHO05D030575 8.7e-24 115.9 133 45.1
PGSC0003DMG400000171 Solanum tuberosum HOM05D003460 ORTHO05D004277 4.5e-20 103.6 136 49.3
Atru.chr5.496 Acer truncatum HOM05D003460 ORTHO05D004277 4.6e-17 93.6 104 51.0
SHI13445 Sapria himalayana HOM05D003460 ORTHO05D004277 1.8e-16 91.7 143 39.9
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 4.3e-15 87.0 87 50.6
Psat4g193320 Pisum sativum HOM05D003460 ORTHO05D004277 1.4e-13 82.0 107 48.6
HPP92_028274 Vanilla planifolia HOM05D003460 ORTHO05D030575 3.6e-09 67.4 53 56.6
SHI13446 Sapria himalayana HOM05D003460 ORTHO05D030575 6.3e-06 56.6 117 34.2


User provided reference genes

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