Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 0.0e+00 2248.0 1156 100.0
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 0.0e+00 1652.1 1068 78.7
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 1.2e-307 1060.1 738 74.3
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 5.3e-290 1001.5 1125 49.5
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 2.9e-288 995.7 1117 50.7
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.9e-287 993.0 1111 51.1
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 6.7e-285 984.6 1109 49.6
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 8.7e-285 984.2 1113 50.5
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 5.6e-284 981.5 1111 50.0
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 2.9e-280 969.1 1122 49.4
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 3.5e-278 962.2 1117 48.9
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 1.8e-277 959.9 1106 48.8
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 2.3e-277 959.5 1095 49.5
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 3.9e-277 958.7 1106 49.5
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 4.3e-276 955.3 1116 48.6
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 7.4e-276 954.5 1127 48.7
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 1.6e-275 953.4 1127 47.2
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 8.2e-275 951.0 1129 47.7
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 1.4e-274 950.3 1123 47.7
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 4.0e-274 948.7 1126 47.9
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 6.9e-274 948.0 1112 48.5
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 9.0e-274 947.6 1103 48.4
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 1.5e-273 946.8 1117 47.7
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 5.8e-273 944.9 1116 47.8
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 1.3e-272 943.7 1129 47.7
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 2.9e-272 942.6 1121 47.8
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 4.9e-272 941.8 1123 47.8
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 5.5e-271 938.3 1114 49.0
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 7.1e-271 937.9 1114 47.9
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 7.1e-271 937.9 1125 46.9
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 3.5e-270 935.6 1116 48.2
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 4.6e-270 935.3 1128 48.1
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.9e-270 934.5 1113 47.4
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 1.8e-269 933.3 1113 47.5
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 2.3e-269 932.9 1122 48.3
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 5.1e-269 931.8 1111 48.4
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 6.7e-269 931.4 1113 47.3
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 3.3e-268 929.1 1112 48.4
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 1.3e-267 927.2 1123 46.8
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.3e-267 927.2 1117 46.8
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 1.3e-267 927.2 1127 47.6
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 1.6e-267 926.8 1116 47.8
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 1.6e-267 926.8 1130 47.2
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 2.2e-267 926.4 1113 48.1
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 4.8e-267 925.2 1133 47.3
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 8.2e-267 924.5 1079 48.4
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 3.1e-266 922.5 1107 47.6
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 6.9e-266 921.4 1105 47.7
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 9.0e-266 921.0 1124 47.4
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 9.0e-266 921.0 1117 46.6
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 1.2e-265 920.6 1112 47.5
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 2.0e-265 919.8 1106 46.9
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.6e-265 919.5 1113 47.3
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 4.5e-265 918.7 1122 46.8
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.3e-264 917.1 1113 47.4
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 2.9e-264 916.0 1130 46.2
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 3.2e-263 912.5 1125 47.7
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 2.1e-262 909.8 1104 46.6
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 6.1e-262 908.3 1118 46.5
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 1.0e-261 907.5 1113 47.2
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 1.8e-261 906.7 1129 47.1
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 3.9e-261 905.6 1086 47.8
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 8.8e-261 904.4 1112 46.5
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 3.3e-260 902.5 1110 46.3
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 5.7e-260 901.7 1110 47.3
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 9.7e-260 901.0 1107 48.1
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 9.7e-260 901.0 1101 46.9
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 9.7e-260 901.0 1094 48.1
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 1.8e-258 896.7 1109 46.0
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 2.4e-258 896.3 1112 46.0
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 2.4e-258 896.3 1121 45.9
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 2.4e-258 896.3 1082 47.5
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 4.1e-258 895.6 1092 47.6
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 6.9e-258 894.8 1109 46.3
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 1.5e-257 893.6 1099 47.0
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 1.5e-257 893.6 1104 46.0
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 2.0e-257 893.3 1090 48.1
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 2.6e-257 892.9 1110 46.1
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.7e-256 890.2 1122 45.7
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 2.2e-256 889.8 1126 47.1
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 2.2e-256 889.8 1115 46.7
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 1.9e-255 886.7 1109 46.3
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.2e-255 884.8 1149 45.3
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 7.2e-255 884.8 1059 47.4
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 2.1e-254 883.2 1089 46.2
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 1.4e-253 880.6 1159 46.3
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 1.4e-253 880.6 1116 45.5
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 6.7e-253 878.2 1088 47.2
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 1.1e-252 877.5 1118 45.4
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 2.0e-252 876.7 1100 47.4
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 7.4e-252 874.8 1162 45.8
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 1.3e-251 874.0 1111 45.7
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 1.3e-251 874.0 1087 45.5
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 1.3e-251 874.0 1112 45.4
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 2.8e-251 872.8 1109 45.4
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 6.3e-251 871.7 1098 45.8
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 1.4e-250 870.5 1121 44.9
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 7.0e-250 868.2 1104 45.5
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 2.5e-247 859.8 1107 45.3
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 9.4e-247 857.8 1105 46.2
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 6.1e-246 855.1 1107 45.5
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 1.0e-245 854.4 1094 45.7
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 6.7e-245 851.7 1115 44.9
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.5e-244 850.5 1117 44.0
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 2.0e-244 850.1 1104 44.8
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 5.7e-244 848.6 1123 45.1
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 1.3e-243 847.4 1098 45.2
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 2.2e-243 846.7 1105 45.3
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 1.1e-242 844.3 1098 45.1
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 1.1e-242 844.3 1098 45.1
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 1.1e-242 844.3 1098 45.1
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 3.1e-242 842.8 1095 46.1
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 7.0e-242 841.6 1105 45.7
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 5.9e-241 838.6 1093 45.0
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 1.3e-240 837.4 1102 45.3
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 1.9e-239 833.6 1120 44.1
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 4.2e-239 832.4 1102 44.8
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 1.8e-237 827.0 1087 44.4
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 3.0e-237 826.2 1108 44.7
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 3.4e-236 822.8 1106 44.4
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 3.4e-236 822.8 1106 44.4
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 1.7e-235 820.5 1103 44.2
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 8.3e-235 818.1 1083 44.5
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 3.5e-233 812.8 1107 45.1
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 4.5e-233 812.4 1124 43.8
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 3.0e-229 799.7 1091 44.5
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.6e-225 787.3 1085 43.0
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 7.8e-217 758.4 1161 40.8
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 2.0e-212 743.8 1149 41.0
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 3.4e-212 743.0 1118 41.0
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 2.9e-211 740.0 1103 42.1
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 6.4e-211 738.8 1073 43.4
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 3.2e-186 656.8 1105 39.5
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 9.9e-180 635.2 1097 38.8
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 3.8e-179 633.3 1172 36.6
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.1e-177 627.5 873 43.2
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.0e-176 623.6 863 43.2
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.1e-175 621.7 1169 36.0
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 8.4e-163 578.9 814 43.4
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 1.0e-160 572.0 1001 38.6
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 2.3e-160 570.9 1096 36.8
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 2.1e-158 564.3 1119 36.5
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 6.3e-158 562.8 1140 34.1
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 6.5e-155 552.7 1140 34.2
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 4.3e-151 540.0 757 44.0
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 3.7e-142 510.4 814 40.4
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.2e-139 501.1 757 40.4
Zm00001eb382450 Zea mays HOM05D003460 ORTHO05D004277 1.3e-99 369.0 241 76.3
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 2.6e-95 354.8 299 58.9
CDE04G0432 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 5.6e-74 283.9 305 51.8
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 2.0e-71 275.4 744 29.8
HPP92_028275 Vanilla planifolia HOM05D003460 ORTHO05D004277 2.2e-70 271.9 244 54.9
Zm00001eb055510 Zea mays HOM05D003460 ORTHO05D004277 2.7e-68 265.0 206 68.4
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 6.6e-67 260.4 387 40.1
Os10g0550066 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 8.7e-67 260.0 172 76.7
Phvul.002G081700 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 3.5e-44 184.9 128 69.5
Cfa003926 Carpinus fangiana HOM05D003460 ORTHO05D004277 3.0e-43 181.8 130 68.5
AagrBONN_evm.TU.Sc2ySwM_344.2569 Anthoceros agrestis HOM05D003460 ORTHO05D004277 7.4e-42 177.2 222 44.1
Psat4g169200 Pisum sativum HOM05D003460 ORTHO05D004277 1.3e-35 156.4 307 33.9
SHI13450 Sapria himalayana HOM05D003460 ORTHO05D000014 2.8e-33 148.7 221 39.8
Zm00001eb245130 Zea mays HOM05D003460 ORTHO05D004277 2.2e-30 139.0 88 75.0
Haze_15504 Corylus avellana HOM05D003460 ORTHO05D004277 6.3e-25 120.9 138 51.4
Zm00001eb373730 Zea mays HOM05D003460 ORTHO05D004277 6.3e-25 120.9 77 77.9
Zm00001eb156420 Zea mays HOM05D003460 ORTHO05D004277 6.9e-24 117.5 77 76.6
Zm00001eb291570 Zea mays HOM05D003460 ORTHO05D004277 2.0e-23 115.9 116 58.6
Actinidia25173 Actinidia chinensis HOM05D003460 ORTHO05D004277 8.8e-19 100.5 52 82.7
TPR.G30982 Trifolium pratense HOM05D003460 ORTHO05D004277 2.4e-08 65.9 59 57.6
arahy.Tifrunner.gnm1.ann1.N0BX7Q Arachis hypogaea HOM05D003460 ORTHO05D087672 2.2e-06 59.3 56 51.8


User provided reference genes

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