Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 1.2e-90 336.7 197 100.0
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 1.9e-38 163.3 203 57.1
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 4.6e-37 158.7 200 55.0
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 2.6e-24 116.3 156 45.5
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 5.9e-24 115.2 107 55.1
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 7.7e-24 114.8 75 72.0
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 2.9e-23 112.8 107 56.1
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 3.8e-23 112.5 102 56.9
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 3.8e-23 112.5 119 51.3
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 3.8e-23 112.5 75 72.0
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 6.5e-23 111.7 78 67.9
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 8.5e-23 111.3 75 69.3
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 1.1e-22 110.9 75 66.7
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 1.1e-22 110.9 107 53.3
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 1.9e-22 110.2 75 69.3
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 3.2e-22 109.4 107 50.5
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 4.2e-22 109.0 76 65.8
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 4.2e-22 109.0 75 69.3
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 4.2e-22 109.0 75 69.3
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 4.2e-22 109.0 107 49.5
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 5.5e-22 108.6 75 68.0
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 5.5e-22 108.6 74 70.3
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 7.2e-22 108.2 75 64.0
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 1.2e-21 107.5 107 49.5
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 1.2e-21 107.5 75 68.0
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 1.6e-21 107.1 75 68.0
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 1.6e-21 107.1 126 44.4
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 2.1e-21 106.7 107 50.5
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 2.1e-21 106.7 107 50.5
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 2.1e-21 106.7 75 65.3
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 2.7e-21 106.3 107 51.4
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 2.7e-21 106.3 74 66.2
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 2.7e-21 106.3 75 66.7
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 2.7e-21 106.3 75 65.3
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 3.6e-21 105.9 107 48.6
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 3.6e-21 105.9 107 48.6
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 3.6e-21 105.9 107 48.6
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 4.7e-21 105.5 106 50.0
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 4.7e-21 105.5 75 64.0
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 4.7e-21 105.5 107 50.5
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 6.1e-21 105.1 107 50.5
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 6.1e-21 105.1 75 64.0
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 6.1e-21 105.1 76 68.4
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 7.9e-21 104.8 75 64.0
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 7.9e-21 104.8 75 66.7
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 7.9e-21 104.8 75 65.3
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 1.0e-20 104.4 75 61.3
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 1.0e-20 104.4 102 51.0
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 1.0e-20 104.4 101 53.5
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 1.4e-20 104.0 75 62.7
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 1.4e-20 104.0 119 47.1
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 3.0e-20 102.8 75 62.7
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 5.1e-20 102.1 107 48.6
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 6.7e-20 101.7 76 60.5
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 6.7e-20 101.7 102 48.0
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 6.7e-20 101.7 76 59.2
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 6.7e-20 101.7 76 60.5
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 6.7e-20 101.7 76 60.5
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 6.7e-20 101.7 75 62.7
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 1.1e-19 100.9 75 61.3
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 1.1e-19 100.9 107 47.7
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 2.0e-19 100.1 102 49.0
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 2.0e-19 100.1 76 59.2
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 2.6e-19 99.8 73 60.3
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 2.6e-19 99.8 75 62.7
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 3.3e-19 99.4 75 61.3
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 3.3e-19 99.4 75 61.3
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 3.3e-19 99.4 75 62.7
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 3.3e-19 99.4 74 58.1
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 3.3e-19 99.4 75 62.7
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 3.3e-19 99.4 75 61.3
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 9.7e-19 97.8 75 61.3
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 1.3e-18 97.4 75 60.0
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 1.7e-18 97.1 75 60.0
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 2.2e-18 96.7 73 61.6
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 2.2e-18 96.7 106 47.2
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 2.8e-18 96.3 75 60.0
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 2.8e-18 96.3 106 48.1
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 2.8e-18 96.3 75 60.0
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 2.8e-18 96.3 75 60.0
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 3.7e-18 95.9 75 58.7
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 4.8e-18 95.5 70 60.0
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 6.3e-18 95.1 108 45.4
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 6.3e-18 95.1 75 57.3
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 6.3e-18 95.1 75 57.3
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 6.3e-18 95.1 75 57.3
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 8.2e-18 94.7 97 49.5
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 8.2e-18 94.7 75 57.3
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 1.4e-17 94.0 103 45.6
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 9.1e-17 91.3 66 59.1
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 1.2e-16 90.9 90 51.1
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 2.6e-16 89.7 75 54.7
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 3.5e-16 89.4 66 60.6
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 1.3e-15 87.4 72 55.6
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 2.2e-15 86.7 60 66.7
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 2.9e-15 86.3 75 52.0
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-15 85.1 78 52.6
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 7.2e-14 81.6 53 67.9
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 8.0e-13 78.2 78 47.4
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 2.6e-11 73.2 57 61.4
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 8.2e-10 68.2 77 42.9
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 4.1e-09 65.9 47 61.7


User provided reference genes

Program Settings