Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 5.3e-102 374.4 194 100.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.2e-58 230.3 192 65.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.3e-52 209.5 173 63.6
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.9e-52 209.1 158 62.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 3.3e-51 205.7 128 71.1
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 4.3e-51 205.3 142 68.3
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 7.3e-51 204.5 147 66.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.2e-50 203.8 137 67.2
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.2e-50 203.8 158 65.2
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.6e-50 203.4 144 66.7
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.6e-50 203.4 137 68.6
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.1e-50 203.0 158 62.7
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.8e-50 202.6 139 68.3
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 6.1e-50 201.4 130 70.0
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 6.1e-50 201.4 130 70.0
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 6.1e-50 201.4 136 68.4
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 8.0e-50 201.1 144 63.9
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.0e-49 200.7 144 65.3
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.4e-49 200.3 146 64.4
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.8e-49 199.9 144 66.0
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.8e-49 199.9 144 63.2
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.8e-49 199.9 130 69.2
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 2.3e-49 199.5 130 69.2
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.3e-49 199.5 130 66.9
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 2.3e-49 199.5 130 69.2
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.3e-49 199.5 144 63.9
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 2.3e-49 199.5 147 63.9
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.0e-49 199.1 146 63.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 3.0e-49 199.1 146 64.4
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 4.0e-49 198.7 128 69.5
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.2e-49 198.4 128 66.4
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.2e-49 198.4 130 70.0
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.2e-49 198.4 130 70.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 5.2e-49 198.4 144 63.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 8.9e-49 197.6 130 66.9
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 8.9e-49 197.6 130 70.8
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.2e-48 197.2 138 64.5
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.2e-48 197.2 130 69.2
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.2e-48 197.2 143 62.2
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.2e-48 197.2 144 63.9
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.5e-48 196.8 147 63.3
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.5e-48 196.8 130 67.7
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.0e-48 196.4 144 64.6
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.0e-48 196.4 130 69.2
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.6e-48 196.1 139 67.6
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 2.6e-48 196.1 147 62.6
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 2.6e-48 196.1 135 65.2
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.4e-48 195.7 184 56.0
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.4e-48 195.7 135 64.4
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 3.4e-48 195.7 136 67.6
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.4e-48 195.3 130 66.9
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 5.7e-48 194.9 142 64.1
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 5.7e-48 194.9 142 64.1
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 5.7e-48 194.9 142 64.1
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.7e-48 194.9 148 62.2
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.7e-48 194.9 144 60.4
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 5.7e-48 194.9 139 65.5
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.7e-48 194.9 135 64.4
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 5.7e-48 194.9 146 63.7
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 7.5e-48 194.5 142 64.1
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 9.8e-48 194.1 129 65.9
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 9.8e-48 194.1 130 66.2
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 9.8e-48 194.1 144 61.8
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.3e-47 193.7 138 63.8
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.7e-47 193.4 139 66.2
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.7e-47 193.4 135 63.7
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.7e-47 193.4 135 63.7
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.7e-47 193.4 143 63.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.7e-47 193.4 130 69.2
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.7e-47 193.4 148 61.5
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.7e-47 193.4 144 62.5
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 2.2e-47 193.0 147 61.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.2e-47 193.0 151 60.9
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.2e-47 193.0 146 62.3
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.9e-47 192.6 147 60.5
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.9e-47 192.6 130 63.8
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 2.9e-47 192.6 151 60.9
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.9e-47 192.6 144 64.6
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.9e-47 192.6 146 59.6
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.9e-47 192.6 130 66.9
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 3.7e-47 192.2 146 60.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 3.7e-47 192.2 145 62.1
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 4.9e-47 191.8 151 61.6
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.9e-47 191.8 143 61.5
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.8e-46 189.9 145 63.4
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 3.2e-46 189.1 148 58.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 3.2e-46 189.1 151 60.9
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.1e-46 188.7 145 60.0
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 4.1e-46 188.7 135 62.2
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 5.4e-46 188.3 136 64.0
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 7.0e-46 188.0 144 60.4
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 7.0e-46 188.0 144 60.4
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 7.0e-46 188.0 153 60.1
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 7.0e-46 188.0 135 63.0
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 9.2e-46 187.6 148 58.8
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.2e-46 187.6 147 61.9
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 2.0e-45 186.4 143 60.8
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.0e-45 186.4 166 57.8
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.0e-45 186.4 166 57.8
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 3.5e-45 185.7 139 61.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 4.6e-45 185.3 137 63.5
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 4.6e-45 185.3 156 58.3
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.6e-45 185.3 127 63.8
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 4.6e-45 185.3 149 57.0
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 5.9e-45 184.9 132 62.9
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 5.9e-45 184.9 132 62.9
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 7.8e-45 184.5 162 56.8
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 7.8e-45 184.5 151 58.3
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 7.8e-45 184.5 166 57.2
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.0e-44 184.1 164 56.1
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.0e-44 184.1 136 61.8
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.0e-44 184.1 132 62.1
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.3e-44 183.7 129 63.6
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.3e-44 183.7 132 65.2
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.7e-44 183.3 145 59.3
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 2.3e-44 183.0 140 58.6
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 2.3e-44 183.0 146 61.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 3.0e-44 182.6 130 62.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.0e-44 182.6 143 60.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 3.9e-44 182.2 127 63.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.9e-44 182.2 138 60.9
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 5.0e-44 181.8 129 62.0
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 6.6e-44 181.4 132 59.8
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 6.6e-44 181.4 152 57.9
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 8.6e-44 181.0 133 60.9
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.9e-43 179.9 169 53.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.9e-43 179.9 131 61.1
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.9e-43 179.9 143 59.4
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.5e-43 179.5 137 61.3
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.6e-43 178.3 134 58.2
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.6e-42 176.8 130 60.8
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.1e-42 176.4 137 57.7
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.8e-42 176.0 129 59.7
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.6e-42 175.6 134 56.7
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.4e-41 173.7 111 70.3
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 4.0e-41 172.2 181 51.4
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 6.8e-41 171.4 130 60.0
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.0e-40 169.9 130 58.5
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.0e-40 169.9 130 58.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 5.8e-40 168.3 222 45.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 8.3e-39 164.5 145 54.5
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.9e-38 163.3 134 56.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.2e-38 162.5 158 53.2
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.2e-37 160.6 131 55.0
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 2.7e-37 159.5 123 58.5
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.5e-37 159.1 126 54.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.3e-36 156.4 108 62.0
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.3e-36 156.4 132 56.1
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.6e-36 154.8 147 52.4
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 8.6e-36 154.5 144 52.8
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 8.6e-36 154.5 132 56.1
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.6e-35 151.8 143 52.4
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.1e-34 149.8 144 50.7
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.2e-34 148.3 141 52.5
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.2e-34 148.3 138 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 8.1e-34 147.9 132 53.0
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.1e-34 147.9 141 52.5
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.4e-33 147.1 128 57.0
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.3e-33 146.4 123 52.0
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.0e-32 143.3 149 48.3
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.8e-32 141.7 154 51.3
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.9e-31 138.7 108 59.3
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.1e-30 137.5 109 54.1
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.0e-28 129.4 130 50.0
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.9e-28 129.0 154 46.8
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.9e-28 129.0 121 52.1
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.9e-27 126.7 132 45.5
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.1e-25 120.9 77 67.5
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-25 119.4 142 49.3
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.2e-25 118.6 85 63.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 6.4e-23 111.7 158 45.6
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 6.4e-23 111.7 158 45.6
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 3.2e-22 109.4 72 69.4
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.2e-21 107.5 177 36.2
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 5.6e-19 98.6 58 74.1
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-18 97.1 58 72.4
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.2e-15 86.7 54 72.2
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.1e-14 84.3 49 71.4


User provided reference genes

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