Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.5e-95 352.4 267 100.0
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 2.6e-50 203.4 277 75.1
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 3.7e-44 183.0 267 65.5
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 8.5e-33 145.2 265 63.0
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.1e-32 144.8 270 62.2
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 7.2e-32 142.1 276 62.0
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.1e-31 140.6 275 63.6
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 6.1e-31 139.0 271 59.0
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 8.0e-31 138.7 262 59.5
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 8.0e-31 138.7 270 60.7
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.3e-30 137.1 182 51.1
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 5.2e-30 136.0 268 57.1
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.2e-29 134.8 269 50.6
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.5e-29 134.4 280 58.9
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.5e-29 134.4 278 58.3
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 2.0e-29 134.0 267 58.8
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 4.4e-29 132.9 271 58.7
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 9.8e-29 131.7 182 50.0
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 2.2e-28 130.6 271 60.1
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.8e-28 130.2 272 61.8
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.3e-28 129.0 184 46.2
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 6.3e-28 129.0 269 54.3
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 8.3e-28 128.6 272 56.2
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 8.3e-28 128.6 271 60.5
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 8.3e-28 128.6 266 53.4
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.3e-28 128.6 270 63.0
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.3e-28 128.6 278 58.6
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.4e-27 127.9 274 60.2
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.4e-27 127.9 271 59.8
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.8e-27 127.5 268 60.4
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 2.4e-27 127.1 278 57.9
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.1e-27 126.7 270 58.9
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 4.1e-27 126.3 270 58.9
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 7.0e-27 125.6 268 60.1
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 9.1e-27 125.2 273 55.7
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.0e-26 124.0 273 55.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 2.0e-26 124.0 270 59.3
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.7e-26 123.6 261 60.5
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 2.7e-26 123.6 188 47.3
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.7e-26 123.6 272 60.3
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 2.7e-26 123.6 272 60.3
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.5e-26 122.9 269 61.0
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 7.7e-26 122.1 271 56.5
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.0e-25 121.7 272 59.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.3e-25 121.3 187 45.5
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.7e-25 120.9 267 56.2
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.9e-25 120.2 272 58.8
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 2.9e-25 120.2 274 59.9
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.9e-25 120.2 188 46.8
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 3.8e-25 119.8 188 46.8
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.0e-25 119.4 280 56.4
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 5.0e-25 119.4 192 46.4
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 8.6e-25 118.6 270 55.2
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.1e-24 118.2 274 57.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.5e-24 117.9 306 52.6
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.5e-24 117.9 276 58.0
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.5e-24 117.9 280 58.9
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.9e-24 117.5 285 54.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 3.2e-24 116.7 279 55.2
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 3.2e-24 116.7 274 59.1
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.2e-24 116.7 274 59.1
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 4.2e-24 116.3 285 57.9
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.2e-24 116.3 270 47.0
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.2e-24 116.3 274 56.2
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.5e-24 115.9 276 57.6
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.2e-23 114.8 273 57.9
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.2e-23 114.8 269 56.5
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-23 114.4 276 57.2
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.6e-23 114.4 274 58.8
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.8e-23 113.6 188 43.1
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 3.6e-23 113.2 264 59.1
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 6.1e-23 112.5 267 58.8
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 6.1e-23 112.5 276 58.3
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 6.1e-23 112.5 287 54.4
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 8.0e-23 112.1 242 57.9
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.0e-22 111.7 265 60.0
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.4e-22 111.3 272 58.5
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.4e-22 111.3 274 58.4
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.0e-22 109.8 288 56.6
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 5.2e-22 109.4 271 55.0
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 8.8e-22 108.6 273 45.4
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 8.8e-22 108.6 278 55.8
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.2e-21 108.2 278 53.6
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.2e-21 108.2 282 55.7
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 2.0e-21 107.5 272 55.9
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 2.0e-21 107.5 279 54.5
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.0e-21 107.5 280 57.1
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.6e-21 107.1 276 56.2
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.6e-21 107.1 269 56.9
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 4.4e-21 106.3 270 55.6
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 5.7e-21 105.9 185 45.4
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 7.5e-21 105.5 216 67.1
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.5e-21 105.5 272 56.2
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 9.8e-21 105.1 274 54.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.3e-20 104.8 270 55.6
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.3e-20 102.1 263 51.3
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.4e-19 101.3 292 52.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.8e-19 100.9 265 34.3
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.8e-19 100.9 296 48.0
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.8e-19 100.9 278 53.6
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.4e-19 100.5 270 53.3
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 3.1e-19 100.1 268 57.1
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.2e-18 98.2 286 56.6
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-18 97.8 272 52.2
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.8e-18 95.5 169 78.1
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 7.8e-18 95.5 212 36.8
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 1.0e-17 95.1 214 34.1
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.3e-17 94.7 183 39.9
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 2.9e-17 93.6 264 52.7
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 2.9e-17 93.6 190 40.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 2.9e-17 93.6 270 53.3
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.1e-16 91.7 191 40.8
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.1e-16 91.7 277 53.4
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.5e-16 91.3 268 54.5
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 2.5e-16 90.5 283 55.1
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 5.6e-16 89.4 282 52.1
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 7.3e-16 89.0 266 51.5
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 9.5e-16 88.6 270 43.7
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 9.5e-16 88.6 270 43.7
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 9.5e-16 88.6 281 53.0
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.2e-15 88.2 282 52.5
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.6e-15 87.8 269 44.2
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 2.1e-15 87.4 280 51.1
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.8e-15 87.0 294 52.4
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 3.6e-15 86.7 270 51.1
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 4.7e-15 86.3 270 51.5
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 4.7e-15 86.3 270 51.5
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.8e-14 84.3 277 52.3
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 2.3e-14 84.0 265 55.1
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.3e-14 84.0 282 55.3
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 5.2e-14 82.8 133 46.6
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 8.9e-14 82.0 276 52.5
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 8.9e-14 82.0 187 38.5
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 1.5e-13 81.3 276 50.7
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.5e-13 81.3 276 52.5
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 1.5e-13 81.3 276 50.7
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 1.5e-13 81.3 276 50.7
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 2.0e-13 80.9 256 56.2
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.6e-13 80.5 266 54.5
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.4e-13 80.1 277 51.6
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 3.4e-13 80.1 276 52.5
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 3.4e-13 80.1 164 40.2
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 7.5e-13 79.0 273 51.3
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 7.5e-13 79.0 279 51.6
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 9.8e-13 78.6 266 39.8
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.3e-12 78.2 271 39.9
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 2.2e-12 77.4 276 52.9
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.4e-11 74.7 139 46.0
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.2e-11 73.6 277 52.0
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 9.2e-11 72.0 280 52.5
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 9.2e-11 72.0 189 37.6
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.2e-10 71.6 218 55.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 3.5e-10 70.1 270 55.9
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 4.6e-10 69.7 280 51.8
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 2.5e-08 63.9 122 82.0
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 4.7e-07 59.7 224 37.1
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.2e-07 59.3 131 36.6
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 6.2e-07 59.3 271 36.5
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.8e-06 57.8 137 40.1
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 5.2e-06 56.2 183 30.1
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 8.9e-06 55.5 39 66.7


User provided reference genes

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