Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 9.1e-257 889.8 472 100.0
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.3e-150 535.8 428 68.5
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 4.1e-148 528.9 427 68.6
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.7e-141 505.8 374 71.1
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 6.5e-138 495.0 370 69.7
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.9e-137 493.4 368 70.1
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 7.2e-137 491.5 437 63.8
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 4.7e-136 488.8 424 60.1
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 4.7e-136 488.8 376 66.0
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.0e-135 486.1 368 68.5
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.8e-135 485.0 366 68.9
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.2e-134 484.2 362 69.1
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 7.5e-134 481.5 405 62.5
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 3.7e-133 479.2 364 67.3
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 6.3e-133 478.4 425 63.3
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 8.3e-133 478.0 410 62.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.1e-132 477.6 369 65.6
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 3.1e-132 476.1 418 60.0
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 4.1e-132 475.7 362 66.3
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 7.0e-132 474.9 379 64.9
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.2e-131 474.2 369 64.8
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.6e-131 473.8 368 66.0
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.6e-131 473.8 362 66.3
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 2.0e-131 473.4 363 68.0
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.5e-131 472.6 362 66.3
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 5.9e-131 471.9 366 65.8
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 7.7e-131 471.5 359 65.7
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.3e-130 469.9 369 65.6
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 2.9e-130 469.5 392 62.0
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 6.6e-130 468.4 365 66.0
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.1e-129 467.6 410 61.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.5e-129 467.2 400 59.8
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.3e-129 466.1 376 64.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 4.2e-129 465.7 364 66.5
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 5.5e-129 465.3 361 66.8
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 5.5e-129 465.3 399 60.4
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 9.5e-129 464.5 361 66.8
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.6e-128 463.8 360 64.7
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.8e-128 463.0 366 65.6
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 6.1e-128 461.8 374 62.8
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 8.0e-128 461.5 403 60.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.0e-127 461.1 362 65.5
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 1.0e-127 461.1 361 65.1
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.4e-127 460.7 369 64.8
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.4e-127 460.7 373 63.8
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.3e-127 459.9 364 64.8
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.3e-127 459.9 363 65.3
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 5.2e-127 458.8 362 63.8
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 8.9e-127 458.0 372 64.2
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.6e-126 456.4 361 65.4
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.6e-126 456.4 491 54.2
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 4.4e-126 455.7 361 65.1
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 7.5e-126 454.9 362 64.9
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.3e-125 454.1 285 75.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.1e-124 451.1 368 63.0
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.4e-124 449.9 362 64.4
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 4.1e-124 449.1 362 63.3
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.2e-123 447.6 364 64.0
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.2e-123 447.6 285 74.4
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.2e-123 447.6 362 62.7
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 2.7e-123 446.4 393 60.3
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.9e-123 445.3 361 62.0
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 5.9e-123 445.3 376 61.7
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 7.8e-123 444.9 369 61.5
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.3e-122 443.4 364 62.9
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 3.8e-122 442.6 366 62.8
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 5.0e-122 442.2 361 62.3
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 6.6e-122 441.8 285 73.3
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 6.6e-122 441.8 361 61.5
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 8.6e-122 441.4 370 61.4
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 8.6e-122 441.4 362 61.9
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 8.6e-122 441.4 363 62.0
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.1e-121 441.0 366 62.3
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.5e-121 440.7 398 60.1
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.9e-121 440.3 372 61.3
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 5.6e-121 438.7 363 62.0
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.2e-120 437.6 361 63.2
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.2e-120 437.6 363 63.1
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.6e-120 437.2 362 63.0
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.6e-120 437.2 362 63.0
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 6.1e-120 435.3 289 70.6
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 8.9e-119 431.4 372 59.7
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 7.5e-118 428.3 335 64.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 3.7e-117 426.0 362 62.2
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.9e-117 425.6 365 61.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.4e-116 424.1 330 67.3
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.2e-115 421.0 366 59.8
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 6.0e-115 418.7 373 60.1
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.0e-115 418.7 366 62.0
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.1e-113 414.5 361 61.8
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.5e-113 414.1 360 60.0
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.5e-113 414.1 283 70.7
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.9e-113 413.7 382 57.9
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.5e-113 413.3 360 60.8
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.6e-112 410.6 362 58.6
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.7e-112 409.1 368 59.5
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.4e-111 407.5 361 60.4
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.5e-110 404.1 369 55.6
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.6e-110 403.3 360 59.7
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.6e-110 403.3 360 59.7
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.4e-110 402.9 360 59.7
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 5.8e-110 402.1 365 59.2
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 7.5e-110 401.7 360 59.4
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-109 401.0 364 59.1
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-109 400.6 360 58.9
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.7e-109 400.6 341 61.9
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 2.2e-109 400.2 289 64.0
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 4.9e-109 399.1 360 59.4
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 9.2e-108 394.8 373 57.6
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 4.6e-107 392.5 373 57.1
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 6.0e-107 392.1 285 69.1
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 4.3e-105 386.0 377 55.4
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 4.3e-105 386.0 370 54.3
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.7e-104 382.5 402 53.2
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.4e-103 380.9 372 56.7
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.3e-103 380.2 372 56.2
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 6.8e-103 378.6 374 54.3
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 8.9e-103 378.3 372 56.2
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.0e-102 377.1 373 55.8
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 2.6e-102 376.7 373 55.8
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.6e-102 376.7 373 55.2
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 7.5e-102 375.2 373 55.5
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.3e-101 374.4 360 56.7
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-101 373.6 373 55.5
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-101 373.6 373 55.2
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-101 373.6 373 55.2
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 2.2e-101 373.6 373 55.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.9e-101 373.2 364 57.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.9e-101 373.2 285 66.3
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 3.2e-100 369.8 370 55.7
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 4.1e-100 369.4 373 54.7
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 7.1e-100 368.6 356 56.7
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.7e-99 366.7 369 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 3.8e-93 346.3 342 52.3
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 9.2e-92 341.7 387 48.6
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.1e-89 334.7 361 51.8
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.6e-88 330.9 291 59.8
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 7.1e-84 315.5 247 64.0
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.7e-69 267.7 191 68.1
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 3.5e-59 233.4 345 39.7
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.2e-51 208.4 297 39.7
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 4.8e-48 196.4 164 60.4
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 3.1e-47 193.7 158 62.0
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 3.8e-45 186.8 273 42.9
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 7.2e-36 156.0 246 40.2
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.6e-27 128.3 124 53.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.4e-23 114.4 173 41.0
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 3.5e-22 110.5 280 28.6
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 5.9e-22 109.8 122 53.3
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 2.1e-19 101.3 70 67.1
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 1.2e-14 85.5 56 69.6
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 3.5e-14 84.0 127 48.8
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 6.3e-08 63.2 110 38.2


User provided reference genes

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