Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0524000 Oryza sativa ssp. japonica HOM05D002846 ORTHO05D002692 8.6e-101 370.5 218 100.0
Zm00001eb322970 Zea mays HOM05D002846 ORTHO05D002692 2.5e-15 86.7 120 50.8
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.0e-13 81.3 197 37.6
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 3.0e-13 79.7 190 35.8
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 6.7e-13 78.6 193 36.3
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 8.8e-13 78.2 127 37.8
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 1.5e-12 77.4 187 36.9
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.5e-12 77.4 196 34.2
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 2.6e-12 76.6 145 40.0
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 4.4e-12 75.9 191 34.6
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 1.7e-11 73.9 189 31.7
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 2.2e-11 73.6 177 33.9
BcaB04g19182 Brassica carinata HOM05D002846 ORTHO05D002692 8.2e-11 71.6 189 30.2
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 8.2e-11 71.6 193 33.7
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 8.2e-11 71.6 192 32.3
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 8.2e-11 71.6 191 33.5
BcaC09g49107 Brassica carinata HOM05D002846 ORTHO05D002692 1.1e-10 71.2 194 31.4
BolC1t04204H Brassica oleracea HOM05D002846 ORTHO05D002692 1.1e-10 71.2 194 31.4
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 1.1e-10 71.2 190 31.6
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 1.1e-10 71.2 150 35.3
BcaB04g20571 Brassica carinata HOM05D002846 ORTHO05D002692 1.4e-10 70.9 189 30.2
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 1.4e-10 70.9 185 31.4
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 1.4e-10 70.9 191 33.0
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 1.4e-10 70.9 134 36.6
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 1.8e-10 70.5 203 31.5
Sabra11G0121900 Salix brachista HOM05D002846 ORTHO05D002692 2.4e-10 70.1 197 34.0
BcaB06g26277 Brassica carinata HOM05D002846 ORTHO05D002692 3.1e-10 69.7 193 29.0
BcaC01g03489 Brassica carinata HOM05D002846 ORTHO05D002692 3.1e-10 69.7 189 30.7
A03p42420 Brassica napus HOM05D002846 ORTHO05D002692 3.1e-10 69.7 189 30.7
C03p51900 Brassica napus HOM05D002846 ORTHO05D002692 3.1e-10 69.7 189 30.7
BolC3t17475H Brassica oleracea HOM05D002846 ORTHO05D002692 3.1e-10 69.7 189 30.7
BraA03t13394Z Brassica rapa HOM05D002846 ORTHO05D002692 3.1e-10 69.7 189 30.7
arahy.Tifrunner.gnm1.ann1.JLE0C4 Arachis hypogaea HOM05D002846 ORTHO05D002692 4.1e-10 69.3 110 42.7
C05p41700 Brassica napus HOM05D002846 ORTHO05D002692 4.1e-10 69.3 184 28.8
BolC5t32905H Brassica oleracea HOM05D002846 ORTHO05D002692 4.1e-10 69.3 184 28.8
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 4.1e-10 69.3 197 34.5
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 4.1e-10 69.3 177 33.9
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 7.0e-10 68.6 185 34.1
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 7.0e-10 68.6 201 30.3
A01p33250 Brassica napus HOM05D002846 ORTHO05D002692 9.1e-10 68.2 190 29.5
BraA01t03443Z Brassica rapa HOM05D002846 ORTHO05D002692 9.1e-10 68.2 190 29.5
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 9.1e-10 68.2 190 32.1
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 1.2e-09 67.8 184 32.1
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 1.2e-09 67.8 186 31.7
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 1.6e-09 67.4 186 31.7
Dinv40727 Davidia involucrata HOM05D002846 ORTHO05D002692 2.0e-09 67.0 177 34.5
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 2.7e-09 66.6 112 42.0
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 2.7e-09 66.6 146 34.2
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 2.7e-09 66.6 187 30.5
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 2.7e-09 66.6 191 33.5
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 2.7e-09 66.6 147 36.1
C01p42460 Brassica napus HOM05D002846 ORTHO05D002692 3.5e-09 66.2 193 30.6
CARHR097660 Cardamine hirsuta HOM05D002846 ORTHO05D002692 3.5e-09 66.2 139 35.3
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 3.5e-09 66.2 182 32.4
Thhalv10021505m.g Eutrema salsugineum HOM05D002846 ORTHO05D002692 3.5e-09 66.2 187 28.9
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 4.5e-09 65.9 206 31.1
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 4.5e-09 65.9 197 34.5
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 5.9e-09 65.5 190 31.6
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 5.9e-09 65.5 173 32.9
arahy.Tifrunner.gnm1.ann1.53UQ7J Arachis hypogaea HOM05D002846 ORTHO05D002692 7.7e-09 65.1 110 41.8
A05p27020 Brassica napus HOM05D002846 ORTHO05D002692 1.0e-08 64.7 193 28.0
BraA05t21588Z Brassica rapa HOM05D002846 ORTHO05D002692 1.0e-08 64.7 193 28.0
Nitab4.5_0002229g0220 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.0e-08 64.7 140 37.1
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 1.3e-08 64.3 186 33.3
Actinidia27214 Actinidia chinensis HOM05D002846 ORTHO05D002692 2.2e-08 63.5 179 35.2
FAN21G2316 Fragaria x ananassa HOM05D002846 ORTHO05D002692 2.2e-08 63.5 146 34.2
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 3.8e-08 62.8 173 31.8
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 3.8e-08 62.8 187 31.6
MBI02_g23957_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 3.8e-08 62.8 136 37.5
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 3.8e-08 62.8 185 31.4
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 3.8e-08 62.8 194 27.8
arahy.Tifrunner.gnm1.ann1.M85TWM Arachis hypogaea HOM05D002846 ORTHO05D002692 5.0e-08 62.4 119 37.0
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 5.0e-08 62.4 199 32.2
arahy.Tifrunner.gnm1.ann1.EJQ6C2 Arachis hypogaea HOM05D002846 ORTHO05D002692 6.5e-08 62.0 130 33.8
MSTRG.14152 Avicennia marina HOM05D002846 ORTHO05D002692 6.5e-08 62.0 134 36.6
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 8.5e-08 61.6 144 34.0
Manes.03G127850 Manihot esculenta HOM05D002846 ORTHO05D002692 8.5e-08 61.6 110 39.1
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 8.5e-08 61.6 192 33.3
TWI38G2122 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 8.5e-08 61.6 197 30.5
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 1.1e-07 61.2 150 33.3
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.1e-07 61.2 147 34.7
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 1.1e-07 61.2 185 31.4
MD03G1209200 Malus domestica HOM05D002846 ORTHO05D002692 1.5e-07 60.8 198 31.8
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 1.5e-07 60.8 140 33.6
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.9e-07 60.5 187 32.1
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 1.9e-07 60.5 165 33.3
AL3G35830 Arabidopsis lyrata HOM05D002846 ORTHO05D002692 2.5e-07 60.1 197 27.9
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.5e-07 60.1 137 35.8
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 2.5e-07 60.1 137 35.8
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 2.5e-07 60.1 189 30.2
FAN25G2313 Fragaria x ananassa HOM05D002846 ORTHO05D002692 3.2e-07 59.7 195 31.8
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 3.2e-07 59.7 138 34.8
PGSC0003DMG400008737 Solanum tuberosum HOM05D002846 ORTHO05D002692 3.2e-07 59.7 145 37.9
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 4.2e-07 59.3 193 31.6
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 4.2e-07 59.3 154 31.2
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 5.5e-07 58.9 201 31.8
FvH4_3g22010 Fragaria vesca HOM05D002846 ORTHO05D002692 7.2e-07 58.5 146 33.6
HanXRQChr05g0159181 Helianthus annuus HOM05D002846 ORTHO05D002692 7.2e-07 58.5 181 29.8
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 7.2e-07 58.5 201 30.3
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 7.2e-07 58.5 97 40.2
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 9.4e-07 58.2 199 30.7
PGR042G0859 Punica granatum HOM05D002846 ORTHO05D002692 9.4e-07 58.2 187 28.9
Peaxi162Scf00407g00210 Petunia axillaris HOM05D002846 ORTHO05D002692 1.2e-06 57.8 138 36.2
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 2.1e-06 57.0 184 25.5
MBI18_g03004_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 2.1e-06 57.0 93 44.1
PSO675G7460 Papaver somniferum HOM05D002846 ORTHO05D002692 2.1e-06 57.0 155 32.9
Eucgr.F00971 Eucalyptus grandis HOM05D002846 ORTHO05D002692 2.7e-06 56.6 188 30.3
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 2.7e-06 56.6 184 32.6
THA.LOC104808493 Tarenaya hassleriana HOM05D002846 ORTHO05D002692 2.7e-06 56.6 173 30.6
CiPaw.03G161600 Carya illinoinensis HOM05D002846 ORTHO05D002692 3.6e-06 56.2 130 36.9
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 3.6e-06 56.2 140 35.7
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 3.6e-06 56.2 141 34.8
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 3.6e-06 56.2 182 33.5
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 4.7e-06 55.8 191 32.5
Carub.0003s2176 Capsella rubella HOM05D002846 ORTHO05D002692 6.1e-06 55.5 183 27.3
CsaV3_3G023230 Cucumis sativus L. HOM05D002846 ORTHO05D002692 6.1e-06 55.5 191 28.8
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 6.1e-06 55.5 153 35.3
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 6.1e-06 55.5 138 36.2
Thecc.07G046400 Theobroma cacao HOM05D002846 ORTHO05D002692 6.1e-06 55.5 139 33.8
Duzib213G0532 Durio zibethinus HOM05D002846 ORTHO05D002692 8.0e-06 55.1 146 34.9
ECA246G4222 Erigeron canadensis HOM05D002846 ORTHO05D002692 8.0e-06 55.1 132 32.6


User provided reference genes

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