Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 2.4e-138 495.7 298 100.0
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 6.3e-46 188.7 227 48.0
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 2.7e-20 103.6 133 44.4
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 8.6e-19 98.6 147 43.5
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.6e-17 94.4 174 35.1
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 2.3e-16 90.5 174 37.9
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 6.8e-16 89.0 116 41.4
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.4e-15 86.3 116 44.8
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 5.8e-15 85.9 215 32.6
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 1.3e-14 84.7 178 35.4
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.7e-14 84.3 104 43.3
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 2.1e-12 77.4 121 38.8
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 6.0e-12 75.9 146 34.2
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 7.8e-12 75.5 146 34.2
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.0e-11 75.1 84 51.2
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 1.7e-11 74.3 109 40.4
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 2.3e-11 73.9 108 37.0
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 3.0e-11 73.6 85 48.2
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 5.1e-11 72.8 103 39.8
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 5.1e-11 72.8 155 30.3
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 6.6e-11 72.4 125 37.6
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 8.6e-11 72.0 84 50.0
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 1.5e-10 71.2 148 33.8
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.5e-10 71.2 138 33.3
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.5e-10 71.2 138 33.3
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.5e-10 71.2 170 33.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.9e-10 70.9 229 29.7
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.5e-10 70.5 219 28.8
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 3.3e-10 70.1 138 34.1
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 3.3e-10 70.1 106 38.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 4.3e-10 69.7 232 28.4
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 9.5e-10 68.6 98 41.8
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 1.2e-09 68.2 157 31.8
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.2e-09 68.2 109 38.5
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.2e-09 68.2 219 28.8
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.6e-09 67.8 238 28.2
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 2.8e-09 67.0 217 26.3
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 2.8e-09 67.0 143 30.8
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 3.6e-09 66.6 263 28.5
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 6.2e-09 65.9 204 29.4
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 6.2e-09 65.9 232 27.2
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 1.4e-08 64.7 210 28.1
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 1.4e-08 64.7 214 29.0
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 2.3e-08 63.9 210 27.6
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 3.1e-08 63.5 230 24.3
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 3.1e-08 63.5 203 28.1
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 3.1e-08 63.5 123 36.6
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 5.2e-08 62.8 186 29.6
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 5.2e-08 62.8 230 23.9
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 5.2e-08 62.8 99 35.4
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 6.8e-08 62.4 82 37.8
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.2e-07 61.6 131 34.4
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 1.5e-07 61.2 157 28.0
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 2.0e-07 60.8 223 25.1
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 2.0e-07 60.8 92 38.0
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 2.6e-07 60.5 138 31.9
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 3.4e-07 60.1 171 26.3
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 5.8e-07 59.3 85 35.3
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 7.6e-07 58.9 213 25.8
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 7.6e-07 58.9 235 25.5
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 7.6e-07 58.9 226 27.0
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 7.6e-07 58.9 230 27.8
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 9.9e-07 58.5 99 40.4
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 9.9e-07 58.5 99 40.4
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 1.3e-06 58.2 215 26.5
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.7e-06 57.8 79 38.0
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 2.2e-06 57.4 125 29.6
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 2.9e-06 57.0 84 36.9
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 3.8e-06 56.6 179 26.3
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 3.8e-06 56.6 179 26.3
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 3.8e-06 56.6 76 42.1
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 3.8e-06 56.6 207 25.6
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 3.8e-06 56.6 89 41.6
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 3.8e-06 56.6 83 41.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 4.9e-06 56.2 179 26.3
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 4.9e-06 56.2 76 36.8
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 8.4e-06 55.5 228 26.3
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 8.4e-06 55.5 74 39.2


User provided reference genes

Program Settings