Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 0.0e+00 1204.9 634 100.0
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 1.1e-212 743.8 643 63.8
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.5e-174 617.1 586 59.2
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 3.5e-134 483.0 668 45.5
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.3e-127 459.1 661 46.1
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.9e-124 450.7 662 45.0
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 6.1e-123 445.7 681 44.9
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.2e-121 441.4 659 45.7
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 9.8e-121 438.3 670 43.6
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 3.7e-120 436.4 695 44.3
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 8.3e-120 435.3 657 45.5
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.4e-119 434.5 678 45.6
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 4.1e-119 433.0 665 44.8
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 2.0e-118 430.6 661 43.6
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 2.0e-118 430.6 686 44.3
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.3e-117 427.9 678 44.1
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 2.2e-117 427.2 670 43.1
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 1.1e-116 424.9 676 44.1
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.5e-116 424.5 629 45.5
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 9.4e-116 421.8 666 44.6
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 3.6e-115 419.9 671 44.1
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 2.3e-114 417.2 674 43.3
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 4.0e-114 416.4 657 42.5
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 5.2e-114 416.0 646 44.9
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 1.2e-113 414.8 668 43.3
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.5e-113 414.5 669 44.5
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 7.5e-113 412.1 668 43.3
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.7e-112 409.8 672 43.6
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 4.9e-112 409.5 672 43.5
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 8.3e-112 408.7 665 43.5
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 1.4e-111 407.9 671 43.1
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 3.1e-111 406.8 666 42.5
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 3.1e-111 406.8 674 42.3
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.1e-111 406.4 680 43.1
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 9.1e-111 405.2 706 41.4
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 2.0e-110 404.1 657 42.2
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.7e-109 401.0 682 43.7
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 1.7e-109 401.0 667 43.8
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.9e-109 400.2 670 43.6
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 6.6e-109 399.1 729 40.3
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 1.6e-107 394.4 666 42.6
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 1.6e-107 394.4 650 44.0
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 2.1e-107 394.0 664 42.5
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.8e-107 393.7 658 42.7
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 4.7e-107 392.9 683 42.0
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 8.0e-107 392.1 677 40.3
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.0e-106 391.7 681 43.2
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 3.0e-106 390.2 686 43.0
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 4.0e-106 389.8 662 41.2
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.2e-105 388.3 717 39.9
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 1.5e-105 387.9 708 41.0
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 2.6e-105 387.1 663 42.7
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 5.7e-105 386.0 638 41.2
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 5.7e-105 386.0 669 42.6
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 4.9e-104 382.9 638 41.1
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 6.3e-104 382.5 666 40.7
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 1.4e-103 381.3 712 39.6
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 2.4e-103 380.6 674 41.2
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 3.2e-103 380.2 652 40.8
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 4.1e-103 379.8 640 44.7
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 5.4e-103 379.4 675 39.7
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 5.4e-103 379.4 677 41.9
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 5.4e-103 379.4 697 41.6
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 7.0e-103 379.0 643 41.1
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 7.0e-103 379.0 664 41.3
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.2e-102 378.3 670 41.2
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 3.5e-102 376.7 709 39.6
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 3.5e-102 376.7 658 40.6
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.3e-101 374.8 842 36.3
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.3e-101 374.8 651 40.2
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-101 374.4 635 43.3
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 1.7e-101 374.4 660 39.5
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 5.0e-101 372.9 659 42.5
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 8.6e-101 372.1 622 41.6
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 2.5e-100 370.5 619 41.5
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 9.5e-100 368.6 674 40.2
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.6e-99 367.9 652 40.5
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 2.8e-99 367.1 629 42.9
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.8e-99 367.1 662 40.5
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 2.8e-99 367.1 690 39.0
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 3.6e-99 366.7 665 40.9
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 3.6e-99 366.7 629 42.8
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 3.6e-99 366.7 626 43.0
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 3.6e-99 366.7 665 39.7
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 8.0e-99 365.5 683 40.4
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.4e-98 364.8 669 40.8
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 1.8e-98 364.4 663 41.6
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.8e-98 364.4 641 39.9
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 3.1e-98 363.6 606 41.3
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 4.0e-98 363.2 656 41.2
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 5.2e-98 362.8 651 42.4
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 6.8e-98 362.5 659 40.1
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.2e-97 361.7 629 42.3
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 2.6e-97 360.5 596 41.3
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 5.8e-97 359.4 640 40.3
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 7.5e-97 359.0 660 40.3
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 9.8e-97 358.6 650 41.8
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.3e-96 358.2 591 41.5
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 1.1e-95 355.1 662 40.6
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 1.1e-95 355.1 690 38.8
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.4e-95 354.8 673 39.5
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 4.1e-95 353.2 673 40.3
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 6.0e-94 349.4 603 41.8
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 5.0e-93 346.3 655 39.1
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 3.6e-91 340.1 657 39.9
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.4e-90 338.2 615 40.7
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.5e-89 334.7 688 37.8
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.0e-89 334.3 673 37.9
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 3.7e-88 330.1 708 36.6
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.8e-82 311.2 629 39.1
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 1.5e-81 308.1 662 36.6
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.0e-81 307.8 589 38.5
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 2.7e-78 297.4 573 37.5
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 8.6e-77 292.4 752 34.2
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 1.9e-76 291.2 584 37.8
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.2e-75 288.5 634 36.4
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 1.8e-74 284.6 639 37.4
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.1e-62 244.6 592 33.3
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.5e-62 243.8 500 37.6
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.4e-58 231.9 425 39.8
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 1.8e-53 214.9 641 31.8
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 8.7e-53 212.6 647 32.6
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 4.6e-38 163.7 549 29.5
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.4e-34 151.4 202 45.5
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.4e-33 147.5 304 37.2
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 7.7e-33 146.4 634 28.1
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.9e-32 144.4 220 43.6
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 8.5e-32 142.9 114 68.4
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 8.5e-32 142.9 114 68.4
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 8.5e-32 142.9 114 68.4
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 3.0e-29 134.4 296 37.5
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 6.7e-29 133.3 122 59.0
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 1.5e-28 132.1 110 66.4
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.5e-28 131.3 130 60.0
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 2.2e-24 118.2 676 27.4
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 2.3e-21 108.2 62 85.5
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 7.0e-18 96.7 58 84.5
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.6e-17 95.5 105 43.8
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 2.6e-17 94.7 95 62.1
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 2.0e-12 78.6 108 48.1
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 5.7e-12 77.0 212 27.4
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 5.3e-10 70.5 682 23.2
Zm00001eb076440 Zea mays HOM05D046788 ORTHO05D006037 1.2e-09 69.3 85 48.2
Zm00001eb023900 Zea mays HOM05D046788 ORTHO05D006037 4.5e-09 67.4 85 48.2
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.9e-07 62.0 85 48.2


User provided reference genes

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