Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0511900 Oryza sativa ssp. japonica HOM05D001078 ORTHO05D000927 6.6e-235 817.0 413 100.0
Zm00001eb322530 Zea mays HOM05D001078 ORTHO05D000927 3.5e-151 538.9 506 59.5
Zm00001eb105830 Zea mays HOM05D001078 ORTHO05D000927 8.5e-142 507.7 509 57.2
COL.COLO4_09674 Corchorus olitorius HOM05D001078 ORTHO05D000927 5.7e-21 106.3 273 34.4
TAR624G0730 Trochodendron aralioides HOM05D001078 ORTHO05D000927 5.7e-21 106.3 348 31.3
CANSAT11G0386 Cannabis sativa HOM05D001078 ORTHO05D000927 2.4e-19 100.9 210 36.7
Ciclev10007654m.g Citrus clementina HOM05D001078 ORTHO05D000927 3.1e-19 100.5 193 35.2
Duzib213G0265 Durio zibethinus HOM05D001078 ORTHO05D000927 4.1e-19 100.1 172 41.9
Thecc.07G033900 Theobroma cacao HOM05D001078 ORTHO05D000927 4.1e-19 100.1 172 40.7
Dinv22255 Davidia involucrata HOM05D001078 ORTHO05D000927 1.2e-18 98.6 249 33.7
Cfa020326 Carpinus fangiana HOM05D001078 ORTHO05D000927 2.0e-18 97.8 338 29.0
CiPaw.11G191200 Carya illinoinensis HOM05D001078 ORTHO05D000927 2.7e-18 97.4 192 33.3
Manes.03G131200 Manihot esculenta HOM05D001078 ORTHO05D000927 3.5e-18 97.1 209 35.9
FAN11G3397 Fragaria x ananassa HOM05D001078 ORTHO05D000927 7.7e-18 95.9 192 34.4
Gohir.D05G372200 Gossypium hirsutum HOM05D001078 ORTHO05D000927 1.0e-17 95.5 88 59.1
Gorai.009G440400 Gossypium raimondii HOM05D001078 ORTHO05D000927 1.0e-17 95.5 88 59.1
QL07p008165 Quercus lobata HOM05D001078 ORTHO05D000927 1.0e-17 95.5 334 30.8
Gohir.A04G014100 Gossypium hirsutum HOM05D001078 ORTHO05D000927 1.3e-17 95.1 88 59.1
MD11G1215500 Malus domestica HOM05D001078 ORTHO05D000927 1.3e-17 95.1 273 30.8
MELO3C013156.2 Cucumis melo HOM05D001078 ORTHO05D000927 1.7e-17 94.7 247 31.6
FAN21G1620 Fragaria x ananassa HOM05D001078 ORTHO05D000927 2.2e-17 94.4 192 34.9
FAN25G2972 Fragaria x ananassa HOM05D001078 ORTHO05D000927 2.2e-17 94.4 192 35.4
FvH4_3g22980 Fragaria vesca HOM05D001078 ORTHO05D000927 2.9e-17 94.0 192 33.9
PGR083G1710 Punica granatum HOM05D001078 ORTHO05D000927 3.8e-17 93.6 228 32.0
FAN16G3411 Fragaria x ananassa HOM05D001078 ORTHO05D000927 5.0e-17 93.2 192 34.4
QL08p009613 Quercus lobata HOM05D001078 ORTHO05D000927 5.0e-17 93.2 334 30.5
VMungo0647G0084 Vigna mungo HOM05D001078 ORTHO05D000927 5.0e-17 93.2 339 29.8
Ca_06328_v3 Cicer arietinum L. HOM05D001078 ORTHO05D000927 8.5e-17 92.4 257 30.0
Ca_30699_v3 Cicer arietinum L. HOM05D001078 ORTHO05D000927 8.5e-17 92.4 257 30.0
MD03G1199100 Malus domestica HOM05D001078 ORTHO05D000927 1.1e-16 92.0 298 29.9
Psat5g176480 Pisum sativum HOM05D001078 ORTHO05D000927 1.1e-16 92.0 287 31.4
TWI38G0838 Tripterygium wilfordii HOM05D001078 ORTHO05D000927 1.1e-16 92.0 287 31.0
TWI39G0966 Tripterygium wilfordii HOM05D001078 ORTHO05D000927 1.1e-16 92.0 413 29.1
HPP92_014179 Vanilla planifolia HOM05D001078 ORTHO05D000927 1.1e-16 92.0 235 31.1
Aqoxy1G02099 Aquilegia oxysepala HOM05D001078 ORTHO05D000927 1.5e-16 91.7 254 32.3
Haze_09697 Corylus avellana HOM05D001078 ORTHO05D000927 1.5e-16 91.7 339 28.6
FAN25G0643 Fragaria x ananassa HOM05D001078 ORTHO05D000927 1.9e-16 91.3 192 34.9
Prupe.4G215800 Prunus persica HOM05D001078 ORTHO05D000927 1.9e-16 91.3 291 29.9
Eucgr.F03477 Eucalyptus grandis HOM05D001078 ORTHO05D000927 2.5e-16 90.9 389 30.1
RcHm_v2.0_Chr5g0040321 Rosa chinensis HOM05D001078 ORTHO05D000927 4.2e-16 90.1 369 27.1
Psat2g011520 Pisum sativum HOM05D001078 ORTHO05D000927 7.2e-16 89.4 172 36.0
Medtr5g093070 Medicago truncatula HOM05D001078 ORTHO05D000927 1.2e-15 88.6 268 28.4
Nn1g07159 Nelumbo nucifera HOM05D001078 ORTHO05D000927 1.2e-15 88.6 91 54.9
TAR627G0281 Trochodendron aralioides HOM05D001078 ORTHO05D000927 2.1e-15 87.8 188 34.6
Lalb_Chr17g0348511 Lupinus albus HOM05D001078 ORTHO05D000927 3.6e-15 87.0 89 55.1
TAR626G0690 Trochodendron aralioides HOM05D001078 ORTHO05D000927 4.7e-15 86.7 368 29.9
DCAR_016713 Daucus carota HOM05D001078 ORTHO05D000927 6.1e-15 86.3 388 27.1
Actinidia35357 Actinidia chinensis HOM05D001078 ORTHO05D000927 8.0e-15 85.9 290 30.3
CiPaw.12G131000 Carya illinoinensis HOM05D001078 ORTHO05D000927 8.0e-15 85.9 449 27.2
Glyma.08G318100 Glycine max HOM05D001078 ORTHO05D000927 8.0e-15 85.9 218 34.4
Glyma.18G095200 Glycine max HOM05D001078 ORTHO05D000927 1.0e-14 85.5 284 28.9
Oeu042944.1 Olea europaea HOM05D001078 ORTHO05D000927 1.0e-14 85.5 88 55.7
TPR.G1187 Trifolium pratense HOM05D001078 ORTHO05D000927 1.4e-14 85.1 343 27.1
Nn1g03501 Nelumbo nucifera HOM05D001078 ORTHO05D000927 1.8e-14 84.7 77 59.7
CSS0032528 Camellia sinensis var. sinensis HOM05D001078 ORTHO05D000927 3.0e-14 84.0 333 27.6
CsaV3_7G021900 Cucumis sativus L. HOM05D001078 ORTHO05D000927 3.0e-14 84.0 438 27.2
Phvul.008G268700 Phaseolus vulgaris HOM05D001078 ORTHO05D000927 4.0e-14 83.6 451 26.6
arahy.Tifrunner.gnm1.ann1.R0BHUP Arachis hypogaea HOM05D001078 ORTHO05D000927 6.8e-14 82.8 252 31.0
Dinv40767 Davidia involucrata HOM05D001078 ORTHO05D000927 8.8e-14 82.4 272 30.1
MBI18_g06103_MAGBIO Magnolia biondii HOM05D001078 ORTHO05D000927 8.8e-14 82.4 321 28.3
arahy.Tifrunner.gnm1.ann1.Z8B0E4 Arachis hypogaea HOM05D001078 ORTHO05D000927 1.2e-13 82.0 252 31.0
arahy.Tifrunner.gnm1.ann1.CUFW55 Arachis hypogaea HOM05D001078 ORTHO05D000927 1.5e-13 81.6 160 40.0
arahy.Tifrunner.gnm1.ann1.F4DV7V Arachis hypogaea HOM05D001078 ORTHO05D000927 2.6e-13 80.9 72 59.7
LjContig00272g0005281 Lotus japonicus HOM05D001078 ORTHO05D000927 4.4e-13 80.1 72 55.6
Actinidia10740 Actinidia chinensis HOM05D001078 ORTHO05D000927 5.7e-13 79.7 271 29.5
AL8G30520 Arabidopsis lyrata HOM05D001078 ORTHO05D000927 5.7e-13 79.7 205 36.1
Phvul.006G045600 Phaseolus vulgaris HOM05D001078 ORTHO05D000927 7.5e-13 79.3 180 33.3
VMungo0540G0032 Vigna mungo HOM05D001078 ORTHO05D000927 7.5e-13 79.3 342 28.4
Glyma.08G318200 Glycine max HOM05D001078 ORTHO05D000927 9.8e-13 79.0 249 30.5
HanXRQChr05g0159511 Helianthus annuus HOM05D001078 ORTHO05D000927 1.3e-12 78.6 181 33.7
Carub.0008s1531 Capsella rubella HOM05D001078 ORTHO05D000927 1.7e-12 78.2 278 30.9
Manes.03G131100 Manihot esculenta HOM05D001078 ORTHO05D000927 1.7e-12 78.2 282 31.2
AT5G55040 Arabidopsis thaliana HOM05D001078 ORTHO05D000927 2.8e-12 77.4 201 33.8
MSTRG.14439 Avicennia marina HOM05D001078 ORTHO05D000927 2.8e-12 77.4 87 50.6
Rhsim06G0218500 Rhododendron simsii HOM05D001078 ORTHO05D000927 3.7e-12 77.0 118 44.9
ECA246G0232 Erigeron canadensis HOM05D001078 ORTHO05D000927 6.3e-12 76.3 451 27.9
Peaxi162Scf00235g00321 Petunia axillaris HOM05D001078 ORTHO05D000927 6.3e-12 76.3 108 45.4
TPR.G33790 Trifolium pratense HOM05D001078 ORTHO05D000927 8.3e-12 75.9 263 28.1
Solyc07g064700.4 Solanum lycopersicum HOM05D001078 ORTHO05D000927 1.1e-11 75.5 191 30.9
Sp6g16970 Schrenkiella parvula HOM05D001078 ORTHO05D000927 1.4e-11 75.1 178 34.3
MSTRG.12982 Avicennia marina HOM05D001078 ORTHO05D000927 3.1e-11 73.9 189 30.2
Aa31LG3G10930 Aethionema arabicum HOM05D001078 ORTHO05D000927 4.1e-11 73.6 157 37.6
Nitab4.5_0005590g0030 Nicotiana tabacum HOM05D001078 ORTHO05D000927 4.1e-11 73.6 100 46.0
Lj8A170G78 Lonicera japonica HOM05D001078 ORTHO05D000927 5.4e-11 73.2 172 34.3
CAN.G337.81 Capsicum annuum HOM05D001078 ORTHO05D000927 7.0e-11 72.8 100 46.0
Sed0021197 Sechium edule HOM05D001078 ORTHO05D000927 9.2e-11 72.4 415 26.3
PGSC0003DMG400022213 Solanum tuberosum HOM05D001078 ORTHO05D000927 9.2e-11 72.4 191 30.4
Nitab4.5_0002287g0090 Nicotiana tabacum HOM05D001078 ORTHO05D000927 1.6e-10 71.6 100 45.0
Atru.chr2.3452 Acer truncatum HOM05D001078 ORTHO05D000927 2.7e-10 70.9 446 25.6
ATR0794G116 Amborella trichopoda HOM05D001078 ORTHO05D000927 2.7e-10 70.9 228 29.8
CARHR268360 Cardamine hirsuta HOM05D001078 ORTHO05D000927 2.7e-10 70.9 270 29.3
Lsat_1_v5_gn_5_3721 Lactuca sativa HOM05D001078 ORTHO05D000927 3.5e-10 70.5 143 37.8
Cpa.g.sc12.291 Carica papaya HOM05D001078 ORTHO05D000927 7.8e-10 69.3 392 25.0
Sopen07g032900 Solanum pennellii HOM05D001078 ORTHO05D000927 7.8e-10 69.3 191 29.8
PSO832G3726 Papaver somniferum HOM05D001078 ORTHO05D000927 1.3e-09 68.6 207 30.9
Oeu062585.1 Olea europaea HOM05D001078 ORTHO05D000927 8.6e-09 65.9 56 60.7
vmacro02227 Vaccinium macrocarpon HOM05D001078 ORTHO05D000927 2.5e-08 64.3 410 26.6
PSO675G7296 Papaver somniferum HOM05D001078 ORTHO05D000927 5.6e-08 63.2 250 28.4
CSS0032882 Camellia sinensis var. sinensis HOM05D001078 ORTHO05D000927 7.3e-08 62.8 420 25.0
Migut.H01816 Erythranthe guttata HOM05D001078 ORTHO05D000927 1.2e-07 62.0 84 42.9
GSVIVG01037668001 Vitis vinifera HOM05D001078 ORTHO05D000927 1.2e-07 62.0 58 58.6
PSO541G2226 Papaver somniferum HOM05D001078 ORTHO05D000927 1.6e-07 61.6 193 29.0
Actinidia05089 Actinidia chinensis HOM05D001078 ORTHO05D000927 2.8e-07 60.8 268 26.9
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 2.8e-07 60.8 70 51.4
vmacro09702 Vaccinium macrocarpon HOM05D001078 ORTHO05D000927 2.8e-07 60.8 108 39.8
THA.LOC104811614 Tarenaya hassleriana HOM05D001078 ORTHO05D000927 8.0e-07 59.3 438 24.7
PSO210G0993 Papaver somniferum HOM05D001078 ORTHO05D000927 1.4e-06 58.5 396 24.0
Eucgr.F00750 Eucalyptus grandis HOM05D001078 ORTHO05D000927 3.0e-06 57.4 53 56.6
CDE05G1337 Ceratophyllum demersum HOM05D001078 ORTHO05D000927 4.0e-06 57.0 142 31.7
MSTRG.15137 Avicennia marina HOM05D001078 ORTHO05D000927 5.2e-06 56.6 72 47.2
Lj6g0014414 Lotus japonicus HOM05D001078 ORTHO05D000927 6.8e-06 56.2 295 27.1
unitig_62.g23287 Utricularia gibba HOM05D001078 ORTHO05D000927 6.8e-06 56.2 77 46.8
SGA_v2.0_scaffold8G04327 Striga asiatica HOM05D001078 ORTHO05D000927 8.9e-06 55.8 177 32.2


User provided reference genes

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