Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 1.6e-226 789.3 448 100.0
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 4.4e-160 568.5 349 79.9
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 8.4e-143 511.1 446 58.1
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.9e-142 510.0 446 58.5
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 1.7e-140 503.4 446 56.5
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.9e-140 502.3 439 57.2
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 8.7e-140 501.1 446 56.7
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 1.9e-139 500.0 446 58.1
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.9e-139 500.0 453 57.8
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 3.3e-139 499.2 452 55.8
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.3e-139 498.8 452 56.4
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 5.6e-139 498.4 446 55.2
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 3.6e-138 495.7 429 57.8
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 6.2e-138 495.0 449 57.9
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 1.1e-137 494.2 447 56.6
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 1.1e-137 494.2 466 53.6
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 3.1e-137 492.7 452 55.3
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 3.1e-137 492.7 449 55.9
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 4.0e-137 492.3 432 57.2
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 5.3e-137 491.9 432 57.2
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 6.9e-137 491.5 440 55.2
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.9e-137 491.5 447 56.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 6.9e-137 491.5 470 54.3
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 1.2e-136 490.7 446 54.9
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.0e-136 490.0 428 56.1
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.0e-136 490.0 433 57.3
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 3.4e-136 489.2 427 59.5
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 3.4e-136 489.2 440 56.8
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.4e-136 488.8 446 55.4
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 9.9e-136 487.6 446 55.4
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.3e-135 487.3 452 55.8
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 2.2e-135 486.5 446 54.3
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 2.9e-135 486.1 450 53.8
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.8e-135 485.7 427 55.3
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 3.8e-135 485.7 447 58.4
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 3.8e-135 485.7 446 55.6
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 1.4e-134 483.8 446 53.8
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.4e-134 483.8 442 55.2
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.9e-134 483.4 438 59.4
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 2.4e-134 483.0 427 55.7
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 4.2e-134 482.3 430 56.7
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 4.2e-134 482.3 436 57.3
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 5.4e-134 481.9 446 53.8
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 7.1e-134 481.5 446 53.6
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 9.3e-134 481.1 446 54.5
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.2e-133 480.7 443 53.7
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 1.6e-133 480.3 451 55.2
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 2.7e-133 479.6 446 54.5
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 4.6e-133 478.8 428 56.1
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 7.8e-133 478.0 446 52.9
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 7.8e-133 478.0 430 56.0
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 3.0e-132 476.1 434 57.4
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 3.0e-132 476.1 429 55.2
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 6.6e-132 474.9 439 54.2
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 2.5e-131 473.0 435 59.5
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 9.6e-131 471.1 446 53.6
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 4.8e-130 468.8 449 55.7
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 6.2e-130 468.4 439 53.5
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 8.1e-130 468.0 433 59.1
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 1.8e-129 466.8 429 57.8
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.8e-129 466.8 446 53.1
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 3.1e-129 466.1 427 55.5
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 6.9e-129 464.9 439 52.8
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 6.9e-129 464.9 416 53.8
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 9.0e-129 464.5 433 55.4
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.5e-128 463.8 439 56.7
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 4.5e-128 462.2 430 54.7
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 7.6e-128 461.5 442 57.9
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.3e-127 460.7 442 53.2
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.3e-127 460.7 510 47.6
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.9e-127 458.8 409 57.0
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 9.3e-126 454.5 446 52.7
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 3.0e-124 449.5 446 50.0
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 7.4e-123 444.9 444 52.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 1.6e-122 443.7 401 56.4
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 6.9e-121 438.3 428 52.1
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 4.9e-119 432.2 433 52.7
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 1.1e-118 431.0 435 57.0
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 5.5e-118 428.7 326 61.0
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.9e-116 422.5 429 50.6
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 2.8e-114 416.4 446 48.0
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.6e-112 409.8 447 50.6
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.9e-107 393.7 431 48.0
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.2e-106 390.2 303 61.1
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 2.8e-106 389.8 303 60.4
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.8e-106 389.0 410 50.0
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 2.4e-105 386.7 429 48.7
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 5.3e-105 385.6 320 57.2
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 8.5e-103 378.3 429 47.8
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 3.0e-100 369.8 453 45.3
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 6.7e-100 368.6 331 54.4
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 6.3e-98 362.1 416 45.0
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 3.8e-95 352.8 427 43.6
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 2.5e-94 350.1 272 60.3
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.5e-88 329.7 345 49.6
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 8.5e-87 325.1 287 56.8
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 3.2e-86 323.2 462 40.9
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 7.2e-86 322.0 300 50.7
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 7.7e-80 302.0 469 39.4
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.0e-79 299.3 278 51.4
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 4.5e-72 276.2 293 48.1
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 8.5e-71 271.9 493 35.3
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.5e-70 271.2 238 53.8
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.9e-70 270.8 238 53.8
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 2.1e-69 267.3 240 58.8
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.5e-64 250.0 238 50.8
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 2.5e-62 243.8 205 56.1
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 2.3e-60 237.3 206 55.3
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.0e-55 221.9 125 72.0
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 2.3e-52 210.7 230 45.7
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.0e-52 209.9 177 54.8
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.7e-50 204.5 187 51.3
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 2.9e-50 203.8 358 38.0
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 8.9e-44 182.2 318 37.4
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.9e-44 182.2 198 52.0
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.2e-43 181.8 229 37.6
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.8e-36 157.9 114 57.9
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.3e-23 114.4 122 45.9
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.3e-22 110.5 122 45.9
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.8e-21 107.5 154 37.7
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 4.2e-17 93.6 66 57.6
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 7.1e-17 92.8 50 72.0
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 6.0e-16 89.7 302 26.5
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 2.8e-13 80.9 61 52.5
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 1.2e-11 75.5 291 27.1
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 2.4e-09 67.8 108 41.7
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 1.6e-08 65.1 50 52.0
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 3.5e-08 63.9 46 56.5
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 3.5e-08 63.9 83 41.0
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 4.6e-08 63.5 89 47.2
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.1e-07 60.1 161 27.3


User provided reference genes

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