Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 4.8e-46 188.3 174 100.0
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 2.2e-30 136.3 162 45.1
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 8.6e-27 124.4 161 50.3
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 7.2e-26 121.3 160 53.1
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 5.7e-23 111.7 162 45.1
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.8e-22 109.4 170 38.8
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 5.6e-18 95.1 86 59.3
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 1.1e-13 80.9 84 65.5
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 1.4e-13 80.5 85 67.1
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 1.8e-13 80.1 86 75.6
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.8e-13 80.1 87 48.3
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 2.4e-13 79.7 84 64.3
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 2.4e-13 79.7 87 64.4
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 4.1e-13 79.0 85 68.2
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 5.4e-13 78.6 87 66.7
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 7.0e-13 78.2 83 49.4
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 7.0e-13 78.2 87 66.7
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 9.2e-13 77.8 85 63.5
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 9.2e-13 77.8 86 65.1
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 1.2e-12 77.4 86 66.3
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 1.6e-12 77.0 84 65.5
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 2.7e-12 76.3 85 63.5
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.7e-12 76.3 87 65.5
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.7e-12 76.3 87 65.5
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 2.7e-12 76.3 86 61.6
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 2.7e-12 76.3 83 49.4
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 3.5e-12 75.9 83 65.1
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 3.5e-12 75.9 85 65.9
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 3.5e-12 75.9 87 65.5
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 3.5e-12 75.9 87 65.5
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 4.6e-12 75.5 86 64.0
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 4.6e-12 75.5 87 63.2
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 4.6e-12 75.5 83 66.3
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 4.6e-12 75.5 87 64.4
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 6.0e-12 75.1 85 62.4
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 6.0e-12 75.1 85 62.4
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 6.0e-12 75.1 85 75.3
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 6.0e-12 75.1 85 63.5
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 6.0e-12 75.1 87 47.1
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 6.0e-12 75.1 85 63.5
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 7.8e-12 74.7 84 64.3
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 7.8e-12 74.7 85 48.2
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 7.8e-12 74.7 83 81.9
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 1.0e-11 74.3 83 63.9
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.0e-11 74.3 85 61.2
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 1.0e-11 74.3 83 83.1
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 1.0e-11 74.3 83 63.9
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.3e-11 73.9 85 64.7
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 1.3e-11 73.9 85 58.8
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.3e-11 73.9 85 58.8
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.3e-11 73.2 85 60.0
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 58.6
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 59.8
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 58.6
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 58.6
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 59.8
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 59.8
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 60.9
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 59.8
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.3e-11 73.2 83 63.9
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 2.3e-11 73.2 87 59.8
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 3.0e-11 72.8 84 61.9
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 3.9e-11 72.4 87 59.8
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 3.9e-11 72.4 87 59.8
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 3.9e-11 72.4 86 59.3
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 3.9e-11 72.4 84 47.6
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 5.0e-11 72.0 82 81.7
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 5.0e-11 72.0 85 61.2
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 6.6e-11 71.6 82 82.9
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 6.6e-11 71.6 85 61.2
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 8.6e-11 71.2 85 62.4
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 8.6e-11 71.2 85 64.7
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 8.6e-11 71.2 87 47.1
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 8.6e-11 71.2 82 64.6
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 1.1e-10 70.9 84 63.1
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 1.1e-10 70.9 85 58.8
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 1.1e-10 70.9 87 55.2
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 1.5e-10 70.5 85 61.2
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 1.5e-10 70.5 80 60.0
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 1.9e-10 70.1 85 61.2
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 1.9e-10 70.1 85 61.2
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.9e-10 70.1 84 56.0
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 1.9e-10 70.1 85 58.8
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 3.3e-10 69.3 82 61.0
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 3.3e-10 69.3 83 57.8
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 5.6e-10 68.6 84 57.1
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 5.6e-10 68.6 85 57.6
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 7.3e-10 68.2 87 55.2
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 2.1e-09 66.6 84 58.3
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 3.6e-09 65.9 84 57.1
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 6.2e-09 65.1 82 80.5
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 5.8e-07 58.5 85 40.0
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 2.2e-06 56.6 80 56.2
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 2.9e-06 56.2 85 38.8


User provided reference genes

Program Settings