Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.0e-110 402.9 243 100.0
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 6.9e-63 245.0 243 63.0
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.3e-47 192.2 225 53.8
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.6e-46 190.7 231 51.5
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.3e-45 187.6 228 50.4
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.8e-45 186.0 239 54.4
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.5e-45 184.9 244 46.3
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 1.1e-44 184.5 179 64.8
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 9.4e-44 181.4 220 47.3
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 2.0e-41 173.7 231 45.5
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 3.4e-41 172.9 232 45.7
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.7e-41 172.2 225 44.0
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.3e-40 171.0 231 43.3
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.3e-40 171.0 225 44.4
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.1e-39 167.9 238 45.4
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 3.1e-39 166.4 255 42.4
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.3e-37 161.0 237 42.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 9.4e-36 154.8 241 42.3
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.5e-33 147.5 210 41.0
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 7.7e-30 135.2 209 40.7
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 4.0e-26 122.9 233 36.1
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 7.5e-25 118.6 229 34.9
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 3.7e-24 116.3 175 41.1
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 3.2e-23 113.2 137 48.2
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 7.0e-23 112.1 243 35.0
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 4.5e-22 109.4 243 33.3
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 8.6e-21 105.1 218 35.3
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 7.3e-20 102.1 243 33.3
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.2e-19 101.3 192 38.0
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 2.8e-19 100.1 245 33.1
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 6.1e-19 99.0 250 30.0
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 6.1e-19 99.0 260 31.2
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 6.1e-19 99.0 260 31.2
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 8.0e-19 98.6 251 31.5
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 8.0e-19 98.6 255 32.2
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 8.0e-19 98.6 269 32.3
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 8.0e-19 98.6 199 35.2
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.4e-18 97.8 254 33.9
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 2.3e-18 97.1 257 30.7
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.1e-18 96.7 258 32.2
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.0e-18 96.3 248 32.3
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 4.0e-18 96.3 254 31.1
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.0e-18 96.3 250 30.4
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 5.2e-18 95.9 254 33.1
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 6.8e-18 95.5 234 35.9
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 8.9e-18 95.1 252 30.6
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 8.9e-18 95.1 236 31.4
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.2e-17 94.7 249 32.1
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.5e-17 94.4 260 30.0
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.5e-17 94.4 238 31.1
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.5e-17 94.4 234 31.6
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.5e-17 94.4 249 32.5
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.5e-17 94.4 244 32.8
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.5e-17 94.4 250 31.2
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.5e-17 94.4 250 31.2
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.0e-17 94.0 250 30.0
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 2.0e-17 94.0 256 32.4
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.0e-17 94.0 249 30.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.0e-17 94.0 244 33.6
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.0e-17 94.0 248 33.1
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 2.0e-17 94.0 264 31.4
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.6e-17 93.6 254 29.9
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.6e-17 93.6 243 33.3
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 3.4e-17 93.2 255 31.4
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.4e-17 93.2 204 33.3
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 3.4e-17 93.2 238 37.8
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 3.4e-17 93.2 256 31.2
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 4.4e-17 92.8 236 30.9
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 4.4e-17 92.8 263 29.7
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 4.4e-17 92.8 251 32.3
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 4.4e-17 92.8 254 33.5
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 4.4e-17 92.8 252 31.0
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 4.4e-17 92.8 257 32.7
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 4.4e-17 92.8 238 31.9
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 4.4e-17 92.8 56 76.8
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 4.4e-17 92.8 256 33.2
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 5.8e-17 92.4 272 32.0
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 5.8e-17 92.4 260 33.8
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 5.8e-17 92.4 241 34.0
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.8e-17 92.4 254 30.7
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 5.8e-17 92.4 245 31.0
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 5.8e-17 92.4 260 31.2
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 5.8e-17 92.4 233 37.3
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 7.5e-17 92.0 260 31.2
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.5e-17 92.0 260 31.2
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 7.5e-17 92.0 248 31.0
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 9.8e-17 91.7 249 30.9
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 9.8e-17 91.7 178 36.5
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 9.8e-17 91.7 249 28.9
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 9.8e-17 91.7 251 32.3
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.8e-17 91.7 261 29.9
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 9.8e-17 91.7 254 30.7
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 9.8e-17 91.7 244 32.0
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 9.8e-17 91.7 254 32.3
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 9.8e-17 91.7 262 33.2
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.3e-16 91.3 269 31.2
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.3e-16 91.3 238 40.8
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.3e-16 91.3 261 29.9
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.3e-16 91.3 270 30.7
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.3e-16 91.3 254 30.7
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.3e-16 91.3 248 29.0
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.7e-16 90.9 253 32.0
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.7e-16 90.9 251 29.9
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.7e-16 90.9 260 30.8
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 2.2e-16 90.5 259 30.5
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 2.2e-16 90.5 244 29.9
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.2e-16 90.5 250 30.4
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.9e-16 90.1 231 32.5
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 3.7e-16 89.7 246 30.9
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 3.7e-16 89.7 255 29.4
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 3.7e-16 89.7 257 30.0
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 4.9e-16 89.4 256 30.1
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.9e-16 89.4 252 29.8
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.9e-16 89.4 237 32.1
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 6.4e-16 89.0 254 28.7
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.4e-16 89.0 250 30.4
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 6.4e-16 89.0 263 31.9
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 8.3e-16 88.6 232 32.3
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 8.3e-16 88.6 261 33.7
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 8.3e-16 88.6 253 30.8
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.1e-15 88.2 259 30.5
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.1e-15 88.2 230 31.7
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 1.1e-15 88.2 250 30.4
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.1e-15 88.2 237 30.4
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.1e-15 88.2 267 29.2
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.4e-15 87.8 260 30.8
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.4e-15 87.8 251 31.9
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.9e-15 87.4 211 31.8
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.9e-15 87.4 265 37.7
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.9e-15 87.4 231 32.9
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 2.4e-15 87.0 235 31.1
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.4e-15 87.0 259 29.3
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.4e-15 87.0 245 31.4
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 3.2e-15 86.7 240 29.6
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 3.2e-15 86.7 253 38.3
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 3.2e-15 86.7 245 31.0
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 4.1e-15 86.3 259 33.2
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 4.1e-15 86.3 241 29.9
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 4.1e-15 86.3 231 31.6
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 4.1e-15 86.3 244 31.1
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 5.4e-15 85.9 255 30.2
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 5.4e-15 85.9 244 29.9
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.2e-15 85.1 259 28.6
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 9.2e-15 85.1 244 30.3
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.2e-14 84.7 225 31.6
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.2e-14 84.7 46 71.7
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-14 84.7 255 32.5
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.6e-14 82.8 258 32.2
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 6.0e-14 82.4 159 40.3
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 6.0e-14 82.4 297 28.3
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 7.8e-14 82.0 249 29.3
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 7.8e-14 82.0 223 30.5
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.7e-13 80.9 245 28.6
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.7e-13 80.9 245 28.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 3.0e-13 80.1 228 30.3
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 8.6e-13 78.6 258 30.2
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.1e-12 78.2 203 31.0
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.6e-11 74.3 242 28.9
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.7e-08 64.3 227 28.6
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.9e-08 63.5 36 66.7
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 4.9e-08 62.8 59 49.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.4e-07 61.2 46 54.3
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.9e-07 60.8 52 50.0
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.9e-07 60.8 37 64.9
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 2.4e-07 60.5 58 46.6
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.4e-07 60.5 53 54.7
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.2e-07 60.1 47 55.3
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 5.4e-07 59.3 52 53.8
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 7.1e-07 58.9 51 51.0
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 7.8e-06 55.5 63 50.8
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 7.8e-06 55.5 55 50.9


User provided reference genes

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