Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 0.0e+00 1211.8 613 100.0
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 1.4e-180 637.1 621 54.4
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 4.0e-180 635.6 608 55.4
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 4.0e-180 635.6 610 55.2
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 6.9e-180 634.8 613 54.2
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 9.0e-180 634.4 607 56.5
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 5.8e-179 631.7 608 56.2
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 1.3e-178 630.6 609 55.8
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.1e-177 627.5 605 54.9
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 1.6e-176 623.6 582 57.7
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 1.0e-175 620.9 584 57.5
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 1.0e-175 620.9 614 54.9
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.0e-175 619.4 602 55.3
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.1e-174 617.5 614 52.3
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.9e-174 616.7 619 54.1
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 4.3e-174 615.5 614 53.3
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 4.3e-174 615.5 606 54.3
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 5.6e-174 615.1 601 51.4
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 7.3e-174 614.8 603 55.6
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 1.1e-172 610.9 529 59.4
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 3.1e-172 609.4 601 53.4
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.0e-172 609.0 572 54.9
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 2.6e-171 606.3 609 53.9
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 2.2e-170 603.2 494 61.9
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 2.9e-170 602.8 600 52.5
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 2.9e-170 602.8 610 53.4
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.8e-170 602.4 603 52.9
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 8.4e-170 601.3 611 52.4
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 7.1e-169 598.2 522 58.2
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 9.3e-169 597.8 604 53.6
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 2.7e-168 596.3 604 53.6
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 2.7e-168 596.3 639 51.0
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 2.7e-168 596.3 572 54.9
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-168 595.5 572 55.1
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 6.0e-168 595.1 601 53.2
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-168 595.1 572 55.1
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 6.0e-168 595.1 601 52.4
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 7.9e-168 594.7 612 53.4
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 7.9e-168 594.7 594 54.4
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 7.9e-168 594.7 610 54.1
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.7e-167 591.7 570 54.9
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 8.7e-167 591.3 543 56.4
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 3.3e-166 589.3 570 55.4
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 3.3e-166 589.3 606 51.0
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 4.3e-166 589.0 605 51.6
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 5.6e-166 588.6 599 52.9
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 7.4e-166 588.2 573 56.5
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 7.4e-166 588.2 608 53.0
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 7.4e-166 588.2 573 51.8
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.3e-165 587.4 571 54.1
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 2.1e-165 586.6 598 53.0
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 2.8e-165 586.3 611 52.5
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 4.8e-165 585.5 610 50.2
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 6.2e-165 585.1 609 52.2
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 1.4e-164 583.9 597 53.3
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 1.8e-164 583.6 612 51.6
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.0e-164 582.4 603 52.9
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 2.0e-163 580.1 608 53.1
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 3.8e-162 575.9 616 50.8
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 6.5e-162 575.1 606 50.3
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.9e-161 573.5 494 59.5
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 3.2e-161 572.8 615 51.1
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-160 568.9 562 54.1
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.3e-159 567.4 609 51.9
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 1.3e-159 567.4 600 51.5
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 1.8e-159 567.0 606 52.0
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 3.9e-159 565.8 663 47.1
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 3.9e-159 565.8 609 50.7
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 1.1e-158 564.3 610 49.5
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.9e-158 563.5 513 55.9
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 5.7e-158 562.0 649 48.4
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 7.4e-158 561.6 585 51.5
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.1e-157 560.1 608 50.8
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 8.2e-157 558.1 599 50.9
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 8.2e-157 558.1 581 53.4
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 9.0e-156 554.7 659 47.2
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 1.2e-155 554.3 553 51.4
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 4.5e-155 552.4 616 47.6
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 2.2e-154 550.1 580 51.0
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 2.7e-152 543.1 574 49.5
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 1.8e-151 540.4 509 53.8
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 3.0e-151 539.7 516 54.1
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 6.9e-148 528.5 472 58.1
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 3.4e-147 526.2 498 52.0
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 1.5e-142 510.8 489 54.0
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-139 501.1 586 50.3
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.9e-137 493.8 608 47.2
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 5.5e-137 492.3 511 52.3
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 1.8e-135 487.3 622 46.3
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 5.3e-132 475.7 640 41.7
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 2.6e-131 473.4 475 49.5
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 2.2e-130 470.3 455 53.8
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 2.5e-129 466.8 481 48.9
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.6e-128 464.2 546 47.1
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 7.5e-126 455.3 453 51.7
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 8.2e-125 451.8 444 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 6.5e-122 442.2 576 41.7
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 2.5e-121 440.3 555 43.6
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 4.2e-121 439.5 401 54.1
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 6.8e-111 405.6 353 57.2
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 1.7e-101 374.4 331 56.8
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 1.0e-98 365.2 590 39.5
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 1.9e-97 360.9 467 40.9
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.9e-97 360.9 361 54.6
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.4e-95 354.8 395 45.1
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.5e-89 334.0 282 62.8
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.5e-81 308.1 291 59.8
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 2.0e-78 297.7 287 53.0
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 3.3e-73 280.4 327 50.5
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 4.6e-67 260.0 196 59.2
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 1.8e-58 231.5 401 31.9
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.1e-55 222.2 174 58.6
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 1.4e-55 221.9 173 58.4
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 3.8e-53 213.8 252 48.4
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 8.4e-53 212.6 151 60.9
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-50 203.8 148 64.9
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-50 203.8 148 64.9
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-50 203.8 148 64.9
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-50 203.8 148 64.9
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 2.7e-43 181.0 185 50.8
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 8.7e-42 176.0 173 50.3
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 9.6e-41 172.6 199 49.2
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 9.6e-41 172.6 239 44.4
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.8e-34 151.8 512 25.6
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 3.9e-34 150.6 98 64.3
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 3.6e-27 127.5 154 42.2
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 1.5e-25 122.1 172 39.0
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 1.5e-25 122.1 367 28.1
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 6.9e-23 113.2 231 32.0
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 2.6e-22 111.3 251 37.1
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 2.2e-21 108.2 130 50.0
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 2.2e-21 108.2 67 70.1
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.5e-21 106.3 148 41.9
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 8.8e-18 96.3 139 39.6
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-17 92.8 166 33.1
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 1.1e-15 89.4 129 45.0
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 5.0e-13 80.5 45 71.1
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 1.9e-12 78.6 72 66.7
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 2.1e-11 75.1 120 35.8
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 8.8e-10 69.7 50 56.0
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 5.7e-09 67.0 92 52.2
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 4.8e-08 63.9 112 30.4
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 1.6e-06 58.9 147 29.9


User provided reference genes

Program Settings