Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 0.0e+00 1645.9 898 100.0
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 0.0e+00 1238.0 891 77.9
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.6e-222 775.8 911 47.4
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 9.9e-220 767.7 908 47.2
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 7.1e-218 761.5 932 47.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.8e-216 756.9 945 46.1
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 3.7e-214 749.2 913 47.3
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 3.4e-212 742.7 918 46.8
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 5.8e-212 741.9 913 48.8
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 7.6e-212 741.5 935 46.3
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-211 740.0 914 46.7
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 4.9e-211 738.8 907 47.4
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 4.2e-210 735.7 910 46.4
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 7.1e-210 734.9 915 45.7
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 7.1e-210 734.9 919 46.0
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.2e-209 734.2 924 45.2
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.6e-209 733.8 908 46.9
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 2.1e-209 733.4 922 46.2
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.3e-208 730.7 914 46.1
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 2.3e-208 729.9 917 46.6
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 2.3e-208 729.9 911 46.7
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 3.0e-208 729.6 912 46.9
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 5.1e-208 728.8 911 46.7
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.5e-207 727.2 898 46.3
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 3.3e-207 726.1 920 50.8
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.3e-207 726.1 914 46.8
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 5.7e-207 725.3 803 49.3
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 5.7e-207 725.3 902 46.0
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 9.6e-207 724.5 902 46.0
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 2.8e-206 723.0 920 46.5
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 2.0e-204 716.8 899 46.3
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 3.4e-204 716.1 923 46.5
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 3.4e-204 716.1 906 46.5
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.9e-203 713.0 906 49.7
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 6.5e-203 711.8 900 49.7
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 6.5e-203 711.8 911 45.4
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.9e-202 710.3 907 46.4
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.9e-202 710.3 895 50.3
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.9e-202 710.3 909 46.3
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 1.9e-202 710.3 911 45.4
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 5.5e-202 708.8 909 46.3
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 5.5e-202 708.8 912 45.4
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 7.2e-202 708.4 915 45.4
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.2e-201 707.6 897 50.2
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.6e-201 707.2 917 45.9
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 1.6e-201 707.2 913 46.3
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 7.9e-201 704.9 912 45.8
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.8e-200 703.7 906 48.1
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 7.4e-199 698.4 914 47.6
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 3.1e-197 693.0 895 49.7
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 5.3e-197 692.2 924 43.2
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 1.5e-196 690.6 887 45.3
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 2.6e-196 689.9 900 43.1
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 4.5e-196 689.1 910 44.2
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 6.5e-195 685.3 922 44.1
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.1e-193 680.2 910 49.1
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.7e-193 679.9 902 48.6
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 8.8e-192 674.9 922 44.8
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 3.3e-191 672.9 912 48.1
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 2.2e-190 670.2 728 54.5
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.8e-189 667.2 711 50.5
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 5.3e-189 665.6 926 45.1
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 6.9e-189 665.2 985 43.1
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 5.0e-187 659.1 925 43.4
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 2.1e-185 653.7 891 43.7
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.0e-183 647.1 893 47.6
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 1.3e-182 644.4 894 43.4
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.2e-180 637.9 890 42.6
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 2.0e-180 637.1 940 46.5
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 3.5e-180 636.3 823 47.9
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 4.5e-180 636.0 677 49.9
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 3.8e-179 632.9 869 44.2
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 9.4e-178 628.2 921 42.7
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.6e-177 627.5 923 42.6
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 2.3e-176 623.6 897 42.9
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 1.2e-175 621.3 900 39.9
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 9.1e-173 611.7 918 42.3
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 7.7e-172 608.6 909 45.3
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.5e-170 604.4 667 54.1
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 2.5e-170 603.6 912 41.4
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-169 600.5 693 47.8
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 1.0e-168 598.2 908 41.2
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.8e-165 587.4 917 42.1
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 1.2e-164 584.7 899 44.7
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.5e-164 583.2 728 44.5
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 4.5e-164 582.8 909 42.0
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.6e-161 573.2 905 40.4
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 7.5e-159 565.5 689 46.3
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 2.8e-158 563.5 675 45.6
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.6e-156 557.8 923 40.0
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.6e-151 540.4 842 45.5
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 4.3e-146 523.1 665 46.5
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 2.6e-143 513.8 908 39.1
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 1.9e-141 507.7 1003 35.9
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 3.2e-141 506.9 495 52.7
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.9e-136 488.8 887 38.6
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.6e-135 487.3 529 49.5
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 4.4e-135 486.5 506 52.2
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 8.4e-126 455.7 900 39.0
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.0e-123 447.2 493 49.1
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.0e-119 434.5 444 51.1
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 2.1e-116 424.5 908 35.2
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 6.9e-112 409.5 881 35.2
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 6.4e-110 402.9 911 32.8
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 6.7e-107 392.9 510 44.1
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 7.4e-106 389.4 413 48.4
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-86 323.9 354 47.5
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-84 318.9 474 39.7
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.0e-83 314.3 490 39.6
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 5.1e-83 313.5 222 65.8
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 5.1e-83 313.5 222 65.8
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 3.7e-81 307.4 1018 26.8
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 5.5e-77 293.5 477 40.7
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 2.7e-76 291.2 529 35.2
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 3.6e-76 290.8 472 41.5
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.5e-74 285.4 369 45.8
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.9e-69 268.5 221 57.5
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 7.4e-66 256.5 326 43.9
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-65 255.8 269 50.2
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.9e-61 241.9 308 54.2
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.3e-59 235.0 472 35.4
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 9.7e-58 229.6 300 43.7
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.8e-56 225.3 507 31.8
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.0e-55 221.9 449 32.7
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-55 221.9 366 39.3
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.5e-53 215.7 470 33.4
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.5e-53 213.8 245 47.8
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.1e-48 199.5 485 29.9
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-46 192.6 247 43.7
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.7e-46 192.2 420 36.0
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.9e-45 188.7 368 38.3
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 8.9e-43 179.9 344 35.2
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.2e-39 169.5 137 59.1
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.5e-39 167.9 180 46.7
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 2.6e-34 151.8 582 24.9
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.5e-34 150.2 170 45.3
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.7e-31 141.7 152 50.7
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.7e-31 141.7 152 50.7
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.6e-30 137.1 102 62.7
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 3.0e-22 111.7 167 41.3
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 6.6e-22 110.5 167 41.3
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.8e-19 102.4 78 66.7
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 7.5e-18 97.1 110 47.3
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.9e-16 92.4 579 21.1
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 5.1e-14 84.3 69 56.5
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.3e-13 81.6 179 33.5
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.8e-12 78.6 75 50.7
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.1e-11 75.1 240 32.1
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-08 66.2 90 37.8
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 4.6e-07 61.2 173 31.8
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.8e-07 60.5 45 53.3
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.3e-06 58.9 59 50.8
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.3e-06 58.9 194 28.9
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 6.6e-06 57.4 189 32.8


User provided reference genes

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