Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 5.6e-80 300.8 145 100.0
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 5.6e-32 141.4 110 64.5
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.2e-15 86.3 91 47.3
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 4.8e-15 85.1 90 46.7
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 8.2e-15 84.3 104 42.3
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.1e-14 84.0 91 45.1
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 3.1e-14 82.4 95 45.3
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 4.1e-14 82.0 101 43.6
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 5.3e-14 81.6 106 41.5
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 6.9e-14 81.3 92 45.7
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 6.9e-14 81.3 94 44.7
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 1.2e-13 80.5 91 42.9
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 1.5e-13 80.1 110 38.2
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-13 80.1 101 48.5
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-13 80.1 90 47.8
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 2.0e-13 79.7 90 47.8
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.0e-13 79.7 91 41.8
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.0e-13 79.7 128 40.6
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 2.6e-13 79.3 108 42.6
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 2.6e-13 79.3 92 51.1
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.9e-13 78.2 92 50.0
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 5.9e-13 78.2 96 46.9
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 5.9e-13 78.2 107 43.0
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 7.7e-13 77.8 96 43.8
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.0e-12 77.4 95 40.0
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.3e-12 77.0 89 43.8
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.3e-12 77.0 96 46.9
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.7e-12 76.6 105 38.1
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 1.7e-12 76.6 109 40.4
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.7e-12 76.6 91 44.0
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-12 76.6 90 45.6
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.7e-12 76.6 91 42.9
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 1.7e-12 76.6 92 48.9
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 2.2e-12 76.3 90 44.4
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 2.2e-12 76.3 91 42.9
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 2.9e-12 75.9 125 36.8
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.9e-12 75.9 91 42.9
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 2.9e-12 75.9 96 38.5
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.9e-12 75.9 124 40.3
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 3.8e-12 75.5 100 43.0
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 3.8e-12 75.5 100 43.0
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 5.0e-12 75.1 104 41.3
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.4e-11 73.6 91 39.6
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.4e-11 73.6 91 44.0
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.9e-11 73.2 111 37.8
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.9e-11 73.2 99 39.4
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 1.9e-11 73.2 99 39.4
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.2e-11 72.4 100 40.0
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 3.2e-11 72.4 126 37.3
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 4.2e-11 72.0 93 41.9
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.2e-11 72.0 92 40.2
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 4.2e-11 72.0 91 41.8
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 5.5e-11 71.6 93 41.9
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 5.5e-11 71.6 93 41.9
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 9.4e-11 70.9 93 40.9
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.2e-10 70.5 102 44.1
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.6e-10 70.1 89 40.4
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.6e-10 70.1 89 40.4
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.6e-10 70.1 90 43.3
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.6e-10 70.1 92 35.9
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 1.6e-10 70.1 95 43.2
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 2.1e-10 69.7 92 41.3
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.1e-10 69.7 100 45.0
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 2.1e-10 69.7 91 42.9
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 2.1e-10 69.7 99 41.4
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.1e-10 69.7 91 40.7
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 6.1e-10 68.2 79 46.8
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 7.9e-10 67.8 97 37.1
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.0e-09 67.4 87 41.4
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 1.0e-09 67.4 88 43.2
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 1.0e-09 67.4 92 41.3
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.4e-09 67.0 93 40.9
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.4e-09 67.0 123 32.5
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 1.8e-09 66.6 123 31.7
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.3e-09 66.2 90 36.7
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 2.3e-09 66.2 103 37.9
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 2.3e-09 66.2 91 39.6
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 3.0e-09 65.9 96 39.6
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.9e-09 65.5 93 41.9
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 5.1e-09 65.1 92 41.3
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 5.1e-09 65.1 92 41.3
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.1e-09 65.1 84 45.2
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 6.7e-09 64.7 91 41.8
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 8.8e-09 64.3 86 39.5
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 8.8e-09 64.3 90 41.1
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.5e-08 63.5 97 40.2
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.5e-08 63.5 104 36.5
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.5e-08 63.5 103 35.0
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 2.0e-08 63.2 95 40.0
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.0e-08 63.2 93 40.9
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 3.3e-08 62.4 102 31.4
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 3.3e-08 62.4 94 41.5
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.3e-08 62.4 93 40.9
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 5.7e-08 61.6 94 41.5
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.7e-07 60.1 59 42.4
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 2.2e-07 59.7 91 42.9
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 2.8e-07 59.3 95 34.7
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 3.7e-07 58.9 94 40.4
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 4.8e-07 58.5 131 32.8
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 6.3e-07 58.2 91 34.1
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 8.2e-07 57.8 131 32.1
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 8.2e-07 57.8 96 40.6
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.1e-06 57.4 136 31.6
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 1.1e-06 57.4 88 45.5
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 4.1e-06 55.5 86 38.4
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 6.9e-06 54.7 90 33.3


User provided reference genes

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