Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0447200 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 2.5e-12 73.9 33 100.0
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 2.9e-08 60.5 31 74.2
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.4e-08 58.9 31 74.2
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.4e-08 58.9 31 74.2
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 1.9e-07 57.8 31 71.0
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.9e-07 57.8 31 71.0
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 1.9e-07 57.8 31 71.0
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 1.9e-07 57.8 31 71.0
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.9e-07 57.8 31 71.0
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 3.2e-07 57.0 31 67.7
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 3.2e-07 57.0 31 71.0
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.2e-07 56.6 31 71.0
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 4.2e-07 56.6 28 85.7
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 4.2e-07 56.6 31 71.0
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 5.4e-07 56.2 31 71.0
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 5.4e-07 56.2 31 67.7
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 5.4e-07 56.2 31 67.7
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 7.1e-07 55.8 31 67.7
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 71.0
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 67.7
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 9.3e-07 55.5 31 64.5
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 71.0
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 71.0
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 9.3e-07 55.5 31 71.0
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 1.2e-06 55.1 29 69.0
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 1.6e-06 54.7 31 67.7
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 1.6e-06 54.7 31 67.7
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 64.5
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 67.7
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 64.5
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 67.7
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 67.7
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 67.7
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 67.7
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 64.5
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 2.1e-06 54.3 31 67.7
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 2.7e-06 53.9 31 67.7
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.7e-06 53.9 31 64.5
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.5e-06 53.5 31 67.7
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 3.5e-06 53.5 31 67.7
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.5e-06 53.5 31 67.7
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.5e-06 53.5 31 67.7
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 3.5e-06 53.5 31 64.5
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 6.0e-06 52.8 31 61.3
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 6.0e-06 52.8 31 64.5
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 6.0e-06 52.8 31 64.5
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 7.8e-06 52.4 28 64.3
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 7.8e-06 52.4 31 64.5
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 7.8e-06 52.4 31 64.5
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 7.8e-06 52.4 31 64.5
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.8e-06 52.4 31 64.5
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.8e-06 52.4 31 64.5


User provided reference genes

Program Settings