Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 1.7e-114 416.0 211 100.0
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 1.3e-66 256.9 191 70.7
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 2.0e-30 136.7 174 44.8
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 2.0e-30 136.7 156 49.4
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 4.5e-30 135.6 164 48.2
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 5.0e-29 132.1 172 48.8
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 6.5e-29 131.7 181 44.8
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 1.4e-28 130.6 153 49.7
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 2.5e-28 129.8 147 49.0
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 5.5e-28 128.6 162 45.1
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 9.4e-28 127.9 153 47.1
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 1.2e-27 127.5 163 47.9
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 2.1e-27 126.7 171 43.3
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 2.7e-27 126.3 153 49.0
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 3.6e-27 125.9 147 50.3
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 3.6e-27 125.9 145 49.7
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 4.7e-27 125.6 162 47.5
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 6.1e-27 125.2 156 50.6
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 6.1e-27 125.2 160 46.2
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 1.0e-26 124.4 162 44.4
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 1.4e-26 124.0 168 44.0
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 2.3e-26 123.2 136 48.5
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 3.9e-26 122.5 162 49.4
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 1.5e-25 120.6 155 41.9
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 2.0e-25 120.2 170 44.7
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 2.0e-25 120.2 151 43.7
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 2.0e-25 120.2 147 45.6
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 3.3e-25 119.4 162 46.3
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 4.4e-25 119.0 165 40.6
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 7.4e-25 118.2 104 52.9
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 9.7e-25 117.9 125 48.8
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 1.3e-24 117.5 158 44.9
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 1.3e-24 117.5 162 46.9
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 1.7e-24 117.1 163 44.2
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 2.2e-24 116.7 158 44.3
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 3.7e-24 115.9 143 49.7
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 4.8e-24 115.5 104 53.8
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 8.2e-24 114.8 190 40.5
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 8.2e-24 114.8 173 40.5
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 1.4e-23 114.0 154 43.5
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.4e-23 114.0 154 43.5
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 1.4e-23 114.0 180 40.6
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 1.8e-23 113.6 173 39.9
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 2.4e-23 113.2 153 46.4
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 2.4e-23 113.2 159 45.9
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 2.4e-23 113.2 142 47.2
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 2.4e-23 113.2 115 53.9
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 4.1e-23 112.5 154 42.2
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 5.3e-23 112.1 182 43.4
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 7.0e-23 111.7 164 45.1
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 7.0e-23 111.7 148 46.6
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 9.1e-23 111.3 107 53.3
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 1.2e-22 110.9 147 44.9
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 1.5e-22 110.5 95 54.7
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 2.0e-22 110.2 162 45.1
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 2.6e-22 109.8 77 67.5
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 5.9e-22 108.6 98 54.1
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 5.9e-22 108.6 168 41.7
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 1.3e-21 107.5 170 40.0
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 2.9e-21 106.3 101 55.4
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 3.8e-21 105.9 143 45.5
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 3.8e-21 105.9 106 53.8
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 3.8e-21 105.9 143 45.5
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 3.8e-21 105.9 143 43.4
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 3.8e-21 105.9 161 41.0
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 5.0e-21 105.5 82 63.4
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 5.0e-21 105.5 85 57.6
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 5.0e-21 105.5 165 41.8
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 6.5e-21 105.1 170 39.4
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 6.5e-21 105.1 166 41.0
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.2e-20 102.8 180 37.2
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 5.5e-20 102.1 101 55.4
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 9.4e-20 101.3 106 51.9
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 2.7e-19 99.8 125 40.8
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.4e-18 97.4 77 59.7
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 3.0e-18 96.3 113 46.9
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 6.7e-18 95.1 166 41.0
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 8.8e-18 94.7 159 40.9
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 2.0e-17 93.6 101 48.5
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 1.1e-15 87.8 179 35.8
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 1.4e-15 87.4 92 53.3
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 3.1e-15 86.3 137 35.8
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 2.0e-14 83.6 174 33.3
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 5.5e-12 75.5 185 33.5
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 5.2e-10 68.9 160 32.5
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 9.8e-09 64.7 62 54.8
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.7e-08 63.9 147 33.3
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 3.7e-08 62.8 54 57.4
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 1.8e-07 60.5 63 54.0
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 1.6e-06 57.4 48 52.1


User provided reference genes

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