Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 0.0e+00 1474.1 738 100.0
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.5e-218 761.9 730 52.9
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.0e-214 750.7 707 54.0
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 8.2e-212 741.1 753 51.3
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.4e-208 730.3 734 50.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.6e-207 725.3 717 50.9
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.3e-204 717.2 718 50.3
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.9e-200 703.4 707 50.4
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.5e-200 703.0 716 50.4
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.6e-199 700.3 711 50.6
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 2.7e-199 699.5 712 49.3
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 2.7e-199 699.5 716 50.0
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 2.3e-198 696.4 711 49.9
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 3.0e-198 696.0 707 50.2
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.0e-198 696.0 712 48.3
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 1.1e-197 694.1 711 49.2
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 2.0e-197 693.3 707 49.9
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 2.6e-197 693.0 706 49.3
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-196 690.3 721 48.7
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.7e-196 690.3 739 48.6
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 2.4e-195 686.4 713 50.4
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.2e-194 684.1 713 47.8
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.6e-194 683.7 711 48.4
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.0e-194 683.3 726 49.3
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 3.5e-194 682.6 723 48.3
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.5e-194 682.6 711 50.2
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.0e-193 681.0 710 47.9
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.9e-193 679.5 710 49.9
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 5.0e-193 678.7 711 48.7
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 8.5e-193 677.9 725 48.0
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.1e-192 677.6 732 48.6
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 1.9e-192 676.8 711 48.5
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 4.2e-192 675.6 736 46.7
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.7e-191 672.9 710 48.5
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 3.6e-191 672.5 717 48.3
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 4.7e-191 672.2 720 47.2
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.8e-190 670.2 712 47.9
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 3.0e-190 669.5 717 47.6
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 6.7e-190 668.3 713 47.4
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.2e-189 667.5 711 47.1
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 2.6e-189 666.4 739 47.2
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 7.5e-189 664.8 696 49.0
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 4.8e-188 662.1 744 46.4
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 6.3e-188 661.8 701 49.1
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.1e-187 661.0 733 45.7
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.4e-187 659.8 713 46.6
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 2.0e-186 656.8 705 47.4
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 5.9e-186 655.2 744 46.6
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 7.7e-186 654.8 707 46.4
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 4.2e-184 649.0 704 46.9
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.6e-183 647.1 729 46.6
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.7e-183 646.4 708 47.2
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 4.7e-183 645.6 707 46.8
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 6.1e-183 645.2 706 46.7
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.4e-182 644.0 677 47.9
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.3e-182 643.3 720 46.9
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 4.0e-182 642.5 715 46.7
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 5.2e-182 642.1 739 45.7
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 6.8e-182 641.7 711 46.3
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 9.8e-181 637.9 772 43.8
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.7e-180 636.0 730 45.5
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.1e-179 634.4 716 46.5
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.8e-179 633.6 712 46.3
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 2.4e-179 633.3 587 54.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 3.1e-179 632.9 732 45.5
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 3.1e-179 632.9 733 45.4
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.2e-178 630.9 738 46.1
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.0e-178 630.2 743 44.1
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 3.5e-178 629.4 704 46.3
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.3e-177 627.5 739 45.2
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.7e-177 627.1 711 45.3
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.3e-177 626.7 701 45.8
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 5.2e-174 615.5 716 45.3
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.8e-172 609.8 713 44.6
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.4e-171 607.4 700 45.4
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 1.4e-171 607.4 734 43.7
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 3.5e-170 602.8 712 44.4
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.0e-169 601.3 712 43.5
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.9e-168 597.0 485 57.5
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 4.3e-168 595.9 633 48.0
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.4e-166 590.9 708 45.1
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 4.4e-165 585.9 710 44.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 6.4e-164 582.0 711 44.7
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.1e-163 581.3 698 45.1
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.8e-163 580.5 768 41.3
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 2.3e-161 573.5 682 45.7
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 6.6e-161 572.0 690 43.2
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.2e-159 567.8 702 44.0
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.4e-158 564.3 674 45.7
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 2.3e-158 563.5 712 42.6
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 3.0e-153 546.6 654 45.0
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 5.8e-149 532.3 738 40.5
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 3.7e-148 529.6 644 43.2
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 4.6e-146 522.7 683 42.2
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 9.5e-144 515.0 586 47.3
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.6e-135 487.6 554 46.8
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 4.5e-125 453.0 387 57.9
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 2.9e-124 450.3 694 38.2
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.4e-123 448.0 640 40.6
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.9e-120 437.6 712 36.2
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.1e-119 432.2 714 35.3
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 6.9e-118 429.1 503 45.3
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.2e-114 418.3 750 35.7
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.5e-114 416.8 772 33.7
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.8e-113 414.5 715 35.0
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 7.4e-112 409.1 639 37.7
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 9.6e-112 408.7 795 35.2
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.2e-107 393.7 801 34.0
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 4.4e-88 330.1 440 40.7
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.7e-71 275.0 337 41.5
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 6.1e-66 256.5 335 43.3
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.4e-65 255.4 376 37.0
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.0e-60 236.9 288 44.8
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.8e-57 228.4 560 30.4
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 7.3e-51 206.5 324 38.0
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 8.9e-49 199.5 139 64.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.2e-48 199.1 143 64.3
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 6.0e-37 160.2 477 27.9
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 4.3e-35 154.1 178 43.8
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 8.9e-33 146.4 127 48.8
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 9.2e-30 136.3 206 39.3
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.5e-27 128.3 96 55.2
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 2.5e-27 128.3 163 42.3
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 4.0e-17 94.4 75 54.7
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 6.2e-10 70.5 128 32.0
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 4.0e-09 67.8 60 53.3
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.9e-07 60.8 97 40.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.1e-06 59.7 60 55.0
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 7.1e-06 57.0 198 26.3
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 7.1e-06 57.0 123 34.1


User provided reference genes

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