Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 0.0e+00 1173.7 623 100.0
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.5e-121 440.3 558 51.8
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.6e-78 297.4 501 39.1
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 1.9e-76 291.2 500 38.4
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.0e-74 285.4 495 40.0
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 1.5e-73 281.6 461 40.6
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 4.4e-73 280.0 461 40.8
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.3e-72 278.5 457 38.9
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.8e-71 274.6 496 37.9
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.6e-70 270.8 455 38.2
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 3.5e-70 270.4 463 39.5
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.2e-69 267.7 463 39.5
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 5.0e-69 266.5 471 38.6
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 1.5e-68 265.0 593 36.3
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.9e-68 264.6 454 39.6
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.2e-68 263.5 459 37.7
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 5.5e-68 263.1 474 38.6
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 9.4e-68 262.3 468 39.1
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.6e-67 261.5 460 38.7
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 2.7e-67 260.8 461 39.5
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 2.7e-67 260.8 444 37.8
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 3.6e-67 260.4 458 38.0
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.8e-66 258.1 414 39.1
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 2.3e-66 257.7 463 38.4
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 5.2e-66 256.5 469 38.0
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 6.7e-66 256.1 505 38.6
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.2e-65 255.4 460 37.6
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.0e-65 254.6 461 38.4
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.0e-65 254.6 496 35.5
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.6e-65 254.2 460 37.6
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 9.7e-65 252.3 461 39.7
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 1.3e-64 251.9 485 36.7
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.7e-64 251.5 516 37.4
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 2.2e-64 251.1 462 36.6
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 2.2e-64 251.1 505 37.8
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 2.8e-64 250.8 457 37.4
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 2.8e-64 250.8 470 37.7
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 2.8e-64 250.8 458 37.3
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 3.7e-64 250.4 464 37.5
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 3.7e-64 250.4 469 38.4
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 4.8e-64 250.0 462 39.2
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 6.3e-64 249.6 580 35.7
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 8.2e-64 249.2 471 38.0
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 8.2e-64 249.2 467 36.8
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.1e-63 248.8 471 38.2
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.4e-63 248.4 471 38.0
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 2.4e-63 247.7 490 39.2
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 2.4e-63 247.7 463 35.9
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 2.4e-63 247.7 471 37.8
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 3.1e-63 247.3 466 36.9
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 7.0e-63 246.1 475 37.1
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 7.0e-63 246.1 475 37.1
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 7.0e-63 246.1 489 38.4
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 9.1e-63 245.7 484 36.6
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.6e-62 245.0 483 37.5
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.6e-62 245.0 494 37.0
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 2.0e-62 244.6 480 38.3
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.5e-62 243.8 456 38.2
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 3.5e-62 243.8 461 37.5
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 4.5e-62 243.4 466 38.4
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 5.9e-62 243.0 547 36.2
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 7.7e-62 242.7 496 37.1
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.0e-61 242.3 454 36.1
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 2.2e-61 241.1 471 36.9
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 6.5e-61 239.6 456 36.2
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 8.5e-61 239.2 459 37.7
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.9e-60 238.0 468 37.0
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.5e-60 237.7 462 38.3
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 7.2e-60 236.1 460 37.2
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.2e-59 235.3 488 38.7
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 2.1e-59 234.6 471 37.4
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.7e-59 234.2 464 34.5
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 2.7e-59 234.2 462 36.6
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 8.0e-59 232.6 462 37.9
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 1.8e-58 231.5 464 37.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 2.3e-58 231.1 493 34.1
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 4.0e-58 230.3 462 35.7
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 8.8e-58 229.2 464 36.9
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.5e-57 228.4 454 36.1
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.5e-57 228.4 502 39.0
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 1.5e-57 228.4 465 35.3
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 2.0e-57 228.0 466 35.4
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 7.5e-57 226.1 502 33.5
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 4.8e-56 223.4 458 36.9
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 3.1e-55 220.7 496 37.1
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 7.0e-55 219.5 470 36.0
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 1.6e-54 218.4 460 37.4
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.7e-54 217.6 502 33.9
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 3.5e-54 217.2 465 35.9
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.0e-53 215.7 455 34.3
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 1.3e-53 215.3 491 36.7
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 3.8e-53 213.8 497 35.8
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 5.0e-53 213.4 494 36.0
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 1.1e-52 212.2 460 35.9
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 1.5e-52 211.8 475 34.3
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.5e-52 211.8 498 35.5
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.5e-52 211.1 456 34.9
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.6e-51 208.4 456 34.6
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.2e-50 203.4 461 35.8
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.2e-49 202.2 465 34.2
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 8.3e-48 196.1 492 32.9
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 2.7e-46 191.0 365 37.8
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.3e-45 188.0 505 34.1
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 7.3e-44 183.0 464 31.9
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 7.3e-44 183.0 464 31.9
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.6e-43 180.6 457 31.5
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.8e-42 178.3 490 31.6
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.2e-41 175.6 490 31.4
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 6.4e-40 169.9 479 31.5
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 3.2e-39 167.5 479 31.3
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.6e-38 165.2 486 30.9
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 2.5e-36 157.9 490 29.6
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.8e-34 151.8 159 48.4
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.9e-31 141.7 273 36.6
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.5e-30 137.5 402 32.3
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 3.0e-29 134.4 394 32.5
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.5e-28 131.3 337 36.5
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.3e-21 109.0 308 30.8
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 6.6e-21 106.7 186 41.4
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 4.3e-20 104.0 123 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 5.2e-18 97.1 430 25.6
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 2.6e-17 94.7 144 40.3
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.7e-16 92.0 106 50.0
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.4e-10 71.6 93 40.9
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 6.4e-08 63.5 180 32.8


User provided reference genes

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