Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0267400 Oryza sativa ssp. japonica HOM05D025611 ORTHO05D020922 0.0e+00 2013.8 1086 100.0
Os12g0551900 Oryza sativa ssp. japonica HOM05D025611 ORTHO05D020922 1.5e-182 644.4 486 68.3
Os05g0359000 Oryza sativa ssp. japonica HOM05D013194 ORTHO05D015061 1.7e-56 225.7 478 32.8
Zm00001eb385470 Zea mays HOM05D014040 ORTHO05D016393 1.3e-53 216.1 868 25.7
Os02g0472200 Oryza sativa ssp. japonica HOM05D039349 ORTHO05D020922 1.8e-26 125.9 144 43.8
Os06g0474600 Oryza sativa ssp. japonica HOM05D039349 ORTHO05D020922 9.1e-26 123.6 141 42.6
Os05g0309000 Oryza sativa ssp. japonica HOM05D039349 ORTHO05D020922 2.7e-22 112.1 134 42.5
CANSAT35G1647 Cannabis sativa HOM05D000539 ORTHO05D000233 5.2e-21 107.8 438 26.9
CANSAT56G2878 Cannabis sativa HOM05D000539 ORTHO05D000233 4.4e-20 104.8 309 30.4
AUR62020500 Chenopodium quinoa HOM05D009341 ORTHO05D011542 1.7e-19 102.8 418 23.9
Zm00001eb026230 Zea mays HOM05D014040 ORTHO05D016393 3.7e-19 101.7 629 24.5
EL10Ac4g07898 Beta vulgaris HOM05D009341 ORTHO05D011542 7.7e-17 94.0 414 23.9
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 7.7e-17 94.0 275 28.0
FvH4_3g23522 Fragaria vesca HOM05D000539 ORTHO05D000233 2.9e-16 92.0 344 27.3
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 3.8e-16 91.7 275 29.1
FvH4_4g15803 Fragaria vesca HOM05D000539 ORTHO05D000233 1.1e-15 90.1 301 28.9
CANSAT54G0698 Cannabis sativa HOM05D000539 ORTHO05D000233 1.9e-15 89.4 300 29.7
AUR62015703 Chenopodium quinoa HOM05D009341 ORTHO05D011542 1.9e-15 89.4 430 22.6
AUR62015705 Chenopodium quinoa HOM05D009341 ORTHO05D011542 1.9e-15 89.4 430 22.6
RcHm_v2.0_Chr2g0108861 Rosa chinensis HOM05D000539 ORTHO05D000233 1.9e-15 89.4 239 28.5
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 4.2e-15 88.2 276 28.6
Medtr2g092960 Medicago truncatula HOM05D007793 ORTHO05D010104 7.2e-15 87.4 516 23.8
FvH4_6g12431 Fragaria vesca HOM05D000539 ORTHO05D000233 9.4e-15 87.0 495 24.6
AUR62038589 Chenopodium quinoa HOM05D000107 ORTHO05D000233 1.6e-14 86.3 497 24.5
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 6.1e-14 84.3 276 29.0
Medtr2g037270 Medicago truncatula HOM05D007793 ORTHO05D010104 6.1e-14 84.3 480 25.2
Medtr8g017000 Medicago truncatula HOM05D007793 ORTHO05D010104 6.1e-14 84.3 480 25.2
Sed0011713 Sechium edule HOM05D000539 ORTHO05D000233 6.1e-14 84.3 300 30.7
FvH4_3g31713 Fragaria vesca HOM05D000539 ORTHO05D000233 8.0e-14 84.0 275 28.0
Os04g0330900 Oryza sativa ssp. japonica HOM05D025611 ORTHO05D020922 8.0e-14 84.0 193 31.6
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 1.8e-13 82.8 239 30.5
Medtr3g011560 Medicago truncatula HOM05D007793 ORTHO05D010104 2.3e-13 82.4 480 25.0
Phvul.001G089000 Phaseolus vulgaris HOM05D007793 ORTHO05D010104 2.3e-13 82.4 429 23.1
GSVIVG01000866001 Vitis vinifera HOM05D000539 ORTHO05D000233 2.3e-13 82.4 291 25.8
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 6.8e-13 80.9 263 29.7
RcHm_v2.0_Chr5g0072981 Rosa chinensis HOM05D000539 ORTHO05D000233 2.0e-12 79.3 234 30.3
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 2.0e-12 79.3 241 27.4
PSO541G5385 Papaver somniferum HOM05D000539 ORTHO05D000233 3.4e-12 78.6 342 26.3
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 5.7e-12 77.8 342 26.3
Zm00001eb242190 Zea mays HOM05D014040 ORTHO05D016393 1.7e-11 76.3 520 22.3
Zm00001eb385440 Zea mays HOM05D014040 ORTHO05D016393 1.7e-11 76.3 543 24.3
Os10g0130500 Oryza sativa ssp. japonica HOM05D025611 ORTHO05D020922 3.7e-11 75.1 55 60.0
TPR.G11532 Trifolium pratense HOM05D007793 ORTHO05D010104 4.9e-11 74.7 500 22.8
CANSAT54G1138 Cannabis sativa HOM05D000539 ORTHO05D000233 6.3e-11 74.3 244 30.7
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 1.8e-10 72.8 264 26.5
FvH4_4g09822 Fragaria vesca HOM05D000107 ORTHO05D000062 1.8e-10 72.8 238 28.6
FAN26G3042 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.8e-10 72.8 271 27.7
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 3.1e-10 72.0 281 24.9
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 3.1e-10 72.0 299 26.1
ECA234G1155 Erigeron canadensis HOM05D009001 ORTHO05D011396 5.4e-10 71.2 209 30.1
AUR62042300 Chenopodium quinoa HOM05D007123 ORTHO05D000233 7.0e-10 70.9 247 26.3
Atru.chr6.156 Acer truncatum HOM05D000616 ORTHO05D000233 1.2e-09 70.1 267 24.7
ECA236G2459 Erigeron canadensis HOM05D009001 ORTHO05D011396 2.7e-09 68.9 221 28.5
Hma1.2p1_0013F.1_g008410 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 2.7e-09 68.9 489 22.5
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 2.7e-09 68.9 240 29.6
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 2.7e-09 68.9 243 28.8
CANSAT80G0158 Cannabis sativa HOM05D000539 ORTHO05D000233 3.5e-09 68.6 323 24.5
SGA_v2.0_scaffold61G21245 Striga asiatica HOM05D000036 ORTHO05D010104 3.5e-09 68.6 438 23.5
TPR.G11501 Trifolium pratense HOM05D007793 ORTHO05D010104 5.9e-09 67.8 439 22.8
AUR62040393 Chenopodium quinoa HOM05D007123 ORTHO05D000233 7.7e-09 67.4 249 25.7
FAN09G4072 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.0e-08 67.0 234 29.1
RcHm_v2.0_Chr6g0271081 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-08 66.6 259 27.8
TPR.G25298 Trifolium pratense HOM05D000107 ORTHO05D000062 1.3e-08 66.6 250 26.0
CSS0018077 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-08 66.2 205 26.8
PSO478G4356 Papaver somniferum HOM05D010375 ORTHO05D015177 2.3e-08 65.9 337 26.1
AUR62026896 Chenopodium quinoa HOM05D007123 ORTHO05D000233 2.9e-08 65.5 243 25.5
PSO724G0047 Papaver somniferum HOM05D010375 ORTHO05D000233 2.9e-08 65.5 359 25.6
AUR62037084 Chenopodium quinoa HOM05D007123 ORTHO05D000233 5.0e-08 64.7 244 27.5
PSO700G0133 Papaver somniferum HOM05D010375 ORTHO05D015177 5.0e-08 64.7 343 25.7
PSO717G0128 Papaver somniferum HOM05D010375 ORTHO05D015177 5.0e-08 64.7 343 25.7
PSO724G0607 Papaver somniferum HOM05D010375 ORTHO05D000233 5.0e-08 64.7 343 25.7
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 5.0e-08 64.7 472 20.6
PSO675G2505 Papaver somniferum HOM05D010375 ORTHO05D000233 6.6e-08 64.3 300 28.0
FvH4_7g02993 Fragaria vesca HOM05D000539 ORTHO05D000233 8.6e-08 63.9 147 33.3
EL10Ac2g03395 Beta vulgaris HOM05D007123 ORTHO05D000233 1.1e-07 63.5 245 24.5
Hma1.2p1_0096F.1_g047665 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 1.1e-07 63.5 292 24.7
Hma1.2p1_0409F.1_g146975 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 1.1e-07 63.5 292 24.7
Os02g0785200 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D004054 1.5e-07 63.2 71 42.3
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-07 63.2 316 25.9
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-07 63.2 318 25.8
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 2.5e-07 62.4 293 23.9
Sed0022033 Sechium edule HOM05D000539 ORTHO05D000233 2.5e-07 62.4 204 29.4
Ah.09g223870 Amaranthus hybridus HOM05D009341 ORTHO05D011542 3.3e-07 62.0 510 21.8
RcHm_v2.0_Chr4g0417051 Rosa chinensis HOM05D000539 ORTHO05D000233 3.3e-07 62.0 299 27.4
RcHm_v2.0_Chr7g0228371 Rosa chinensis HOM05D000539 ORTHO05D000233 3.3e-07 62.0 239 27.2
PSO063G4994 Papaver somniferum HOM05D010375 ORTHO05D000233 4.2e-07 61.6 293 27.3
VMungo0647G0191 Vigna mungo HOM05D007793 ORTHO05D010104 4.2e-07 61.6 437 22.7
Zm00001eb237000 Zea mays HOM05D013194 ORTHO05D015061 4.2e-07 61.6 166 27.1
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 5.6e-07 61.2 235 25.5
TPR.G30789 Trifolium pratense HOM05D007793 ORTHO05D000233 5.6e-07 61.2 327 22.9
HanXRQChr09g0253291 Helianthus annuus HOM05D008452 ORTHO05D000233 7.2e-07 60.8 289 26.3
Zm00001eb247410 Zea mays HOM05D014040 ORTHO05D016393 7.2e-07 60.8 267 20.6
Hma1.2p1_0473F.1_g160240 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 9.5e-07 60.5 291 24.1
RcHm_v2.0_Chr4g0401831 Rosa chinensis HOM05D000539 ORTHO05D000233 9.5e-07 60.5 241 26.6
TPR.G24416 Trifolium pratense HOM05D009291 ORTHO05D000233 9.5e-07 60.5 191 26.7
HanXRQChr11g0349201 Helianthus annuus HOM05D008452 ORTHO05D010294 1.2e-06 60.1 289 26.3
HanXRQChr05g0158771 Helianthus annuus HOM05D008452 ORTHO05D010294 2.8e-06 58.9 289 26.0
HanXRQChr17g0547341 Helianthus annuus HOM05D008452 ORTHO05D010294 2.8e-06 58.9 329 25.8
RcHm_v2.0_Chr2g0132431 Rosa chinensis HOM05D000539 ORTHO05D000233 2.8e-06 58.9 207 29.0
TPR.G7531 Trifolium pratense HOM05D009291 ORTHO05D010716 2.8e-06 58.9 214 24.3
CSS0014937 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.6e-06 58.5 209 26.3
HanXRQChr13g0403311 Helianthus annuus HOM05D008452 ORTHO05D000233 4.7e-06 58.2 289 26.0
PSO170G4584 Papaver somniferum HOM05D000539 ORTHO05D000233 4.7e-06 58.2 251 24.3
Hma1.2p1_2026F.1_g311550 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 6.1e-06 57.8 362 21.5
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 6.1e-06 57.8 283 23.3


User provided reference genes

Program Settings