Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.0e-99 365.2 181 100.0
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 4.4e-74 281.6 179 78.8
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 5.5e-45 184.9 184 52.7
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.3e-41 173.7 205 47.8
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 2.3e-35 152.9 188 43.6
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 6.8e-35 151.4 188 43.1
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 3.9e-30 135.6 181 41.4
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.5e-29 133.7 179 41.3
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.9e-29 133.3 183 41.0
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 7.3e-29 131.3 183 39.3
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 2.8e-28 129.4 180 41.1
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 4.7e-28 128.6 181 37.6
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 6.2e-28 128.3 181 37.0
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 6.2e-28 128.3 183 39.3
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.4e-27 127.1 181 37.6
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 2.3e-27 126.3 182 36.8
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 4.0e-27 125.6 177 39.0
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 6.8e-27 124.8 186 36.0
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 6.8e-27 124.8 186 36.0
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 6.8e-27 124.8 184 40.2
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 6.8e-27 124.8 180 36.7
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 6.8e-27 124.8 182 36.3
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.2e-26 124.0 179 39.1
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 2.0e-26 123.2 182 37.4
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 2.6e-26 122.9 181 34.3
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 3.4e-26 122.5 190 36.8
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 3.4e-26 122.5 181 37.0
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 4.4e-26 122.1 181 38.1
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 4.4e-26 122.1 182 36.3
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 4.4e-26 122.1 179 37.4
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 4.4e-26 122.1 182 37.4
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 7.5e-26 121.3 185 36.2
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 7.5e-26 121.3 182 36.8
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.7e-25 120.2 180 38.3
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.2e-25 119.8 175 36.6
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.9e-25 119.4 175 36.6
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.9e-25 119.4 180 35.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.9e-25 119.4 181 36.5
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 2.9e-25 119.4 177 36.7
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 3.7e-25 119.0 183 36.6
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 8.3e-25 117.9 182 36.3
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.1e-24 117.5 180 36.1
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.9e-24 116.7 180 36.7
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.9e-24 116.7 181 34.8
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.4e-24 116.3 173 37.6
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 4.1e-24 115.5 173 37.0
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 4.1e-24 115.5 179 33.5
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 4.1e-24 115.5 180 35.6
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 5.4e-24 115.2 186 38.2
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 5.4e-24 115.2 169 36.7
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 5.4e-24 115.2 177 37.3
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 7.0e-24 114.8 180 35.6
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 7.0e-24 114.8 180 36.1
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 9.2e-24 114.4 177 33.9
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 9.2e-24 114.4 181 35.4
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 9.2e-24 114.4 180 36.7
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 9.2e-24 114.4 179 33.5
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 9.2e-24 114.4 187 35.3
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.2e-23 114.0 192 35.4
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.6e-23 113.6 182 34.6
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 2.1e-23 113.2 179 33.0
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 6.0e-23 111.7 182 34.1
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 6.0e-23 111.7 183 33.9
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 7.8e-23 111.3 195 32.8
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.0e-22 110.9 173 38.2
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 1.3e-22 110.5 187 34.8
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.7e-22 110.2 184 35.3
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.7e-22 110.2 173 38.7
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.7e-22 110.2 173 34.7
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.7e-22 110.2 175 34.9
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 3.0e-22 109.4 179 31.3
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 3.0e-22 109.4 178 33.7
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 3.0e-22 109.4 178 33.7
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.0e-22 109.4 187 33.7
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 3.9e-22 109.0 177 33.3
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 3.9e-22 109.0 177 33.3
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 3.9e-22 109.0 178 32.6
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 5.1e-22 108.6 186 32.3
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 6.6e-22 108.2 178 33.7
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 6.6e-22 108.2 178 33.7
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 6.6e-22 108.2 178 33.7
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 1.9e-21 106.7 179 31.3
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 2.5e-21 106.3 180 35.0
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 7.3e-21 104.8 172 36.0
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 9.5e-21 104.4 180 33.3
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 2.1e-20 103.2 171 35.7
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.1e-20 103.2 179 34.6
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.8e-20 102.8 170 38.2
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 3.6e-20 102.4 181 35.4
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 3.6e-20 102.4 180 33.3
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 6.2e-20 101.7 186 33.3
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 8.1e-20 101.3 165 34.5
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 1.4e-19 100.5 178 30.9
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.8e-19 100.1 166 31.9
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.8e-19 100.1 183 31.1
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 6.8e-19 98.2 197 29.9
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 8.9e-19 97.8 178 31.5
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.5e-18 97.1 183 33.3
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.6e-18 96.3 219 29.7
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 2.6e-18 96.3 192 29.2
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 3.4e-18 95.9 196 30.6
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.4e-18 95.5 177 30.5
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 2.2e-17 93.2 177 32.8
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.9e-17 92.8 209 30.1
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 3.7e-17 92.4 165 32.1
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 3.7e-17 92.4 165 32.1
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 3.7e-17 92.4 186 31.2
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 4.9e-17 92.0 185 30.3
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.2e-15 87.4 177 31.1
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 2.7e-15 86.3 135 35.6
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 2.7e-15 86.3 135 37.8
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.0e-14 84.3 177 32.8
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 1.7e-14 83.6 181 30.9
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.0e-14 82.8 136 38.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 5.1e-14 82.0 201 28.9
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 5.1e-14 82.0 178 29.8
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 6.6e-14 81.6 139 34.5
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 8.6e-14 81.3 165 30.3
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 8.6e-14 81.3 214 27.1
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 2.1e-12 76.6 144 35.4
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 8.1e-12 74.7 81 43.2
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.5e-10 70.5 61 50.8
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 2.0e-10 70.1 87 34.5
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 2.0e-10 70.1 141 31.2
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 4.4e-10 68.9 56 48.2
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 4.4e-10 68.9 56 48.2
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 4.4e-10 68.9 73 46.6
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.6e-10 68.2 162 30.2
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 7.6e-10 68.2 189 25.9
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 9.9e-10 67.8 77 39.0
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 8.4e-09 64.7 186 26.9
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.2e-08 62.4 199 26.1
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 9.3e-08 61.2 73 42.5
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 1.2e-07 60.8 88 35.2
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 2.7e-07 59.7 147 34.7
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 7.8e-07 58.2 57 43.9


User provided reference genes

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