Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 3.1e-118 428.7 253 100.0
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 4.5e-93 345.1 191 81.7
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 5.9e-93 344.7 191 82.7
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 1.7e-92 343.2 194 80.4
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 2.9e-92 342.4 194 80.4
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 3.8e-92 342.0 193 80.8
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 5.0e-92 341.7 193 80.3
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 8.5e-92 340.9 193 80.3
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 1.4e-91 340.1 194 79.9
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 1.4e-91 340.1 193 81.3
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 1.9e-91 339.7 193 79.8
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 2.5e-91 339.3 193 80.8
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 4.2e-91 338.6 193 79.8
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 4.2e-91 338.6 191 80.1
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 4.2e-91 338.6 191 80.6
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 4.2e-91 338.6 193 80.3
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 9.3e-91 337.4 193 80.3
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 1.6e-90 336.7 191 80.6
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 2.1e-90 336.3 193 79.8
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 2.1e-90 336.3 194 79.4
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 2.7e-90 335.9 193 79.3
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 3.6e-90 335.5 194 77.8
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 4.6e-90 335.1 194 79.4
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 4.6e-90 335.1 193 78.8
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 6.1e-90 334.7 193 79.8
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 7.9e-90 334.3 192 78.1
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 7.9e-90 334.3 191 79.6
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 1.0e-89 334.0 194 78.4
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 1.3e-89 333.6 191 80.1
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 1.8e-89 333.2 194 78.9
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 3.0e-89 332.4 194 77.8
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 3.0e-89 332.4 193 78.2
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 5.1e-89 331.6 193 77.7
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 8.7e-89 330.9 193 77.7
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 1.1e-88 330.5 191 77.5
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 1.5e-88 330.1 193 76.7
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 1.5e-88 330.1 193 78.2
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 1.9e-88 329.7 193 77.7
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 1.9e-88 329.7 193 78.2
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 2.5e-88 329.3 191 79.1
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 2.5e-88 329.3 193 76.7
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 3.3e-88 328.9 191 79.1
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 3.3e-88 328.9 192 79.2
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 4.3e-88 328.6 194 76.8
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 4.3e-88 328.6 193 76.2
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 4.3e-88 328.6 194 76.8
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 7.4e-88 327.8 193 77.2
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 9.7e-88 327.4 193 77.2
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 1.3e-87 327.0 191 78.5
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 1.6e-87 326.6 193 76.7
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 2.8e-87 325.9 191 78.5
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 3.7e-87 325.5 191 78.5
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 3.7e-87 325.5 193 78.8
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 3.7e-87 325.5 193 77.2
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 6.3e-87 324.7 193 77.7
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 6.3e-87 324.7 193 77.7
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 8.2e-87 324.3 191 77.0
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 1.1e-86 323.9 191 78.0
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 1.1e-86 323.9 191 78.0
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 1.4e-86 323.6 191 78.5
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 1.4e-86 323.6 192 78.1
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 1.8e-86 323.2 193 77.2
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 2.4e-86 322.8 191 78.0
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 4.1e-86 322.0 191 77.5
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 6.9e-86 321.2 191 77.5
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 1.2e-85 320.5 193 75.6
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 3.4e-85 318.9 183 80.3
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 1.0e-84 317.4 191 77.0
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 2.9e-84 315.8 227 66.5
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 5.0e-84 315.1 192 76.0
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 4.2e-83 312.0 193 72.5
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 9.4e-83 310.8 194 75.3
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 9.4e-83 310.8 193 74.1
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 1.4e-81 307.0 181 77.3
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 3.9e-81 305.4 183 76.5
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 1.3e-79 300.4 182 76.9
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 2.2e-79 299.7 189 73.5
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 5.3e-78 295.0 193 71.5
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 1.2e-77 293.9 191 69.1
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 4.5e-77 292.0 193 73.1
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 5.9e-77 291.6 211 66.8
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 5.9e-77 291.6 185 69.2
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 1.2e-74 283.9 201 69.2
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.2e-74 283.9 163 77.9
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 2.7e-74 282.7 191 66.0
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 1.8e-73 280.0 184 72.3
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 2.6e-72 276.2 201 68.2
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 9.7e-72 274.2 197 67.0
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 4.8e-71 271.9 168 75.6
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 3.1e-70 269.2 183 65.6
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 1.6e-69 266.9 175 66.3
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 2.2e-63 246.5 176 65.9
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 9.1e-62 241.1 183 65.6
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 5.5e-59 231.9 205 58.0
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 7.2e-59 231.5 147 72.1
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 6.8e-57 224.9 134 76.1
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.6e-53 213.8 172 58.1
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 2.0e-53 213.4 195 52.8
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 6.5e-52 208.4 113 84.1
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.5e-51 207.2 190 56.8
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.9e-51 206.8 190 56.3
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 5.2e-49 198.7 194 54.6
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 1.5e-48 197.2 137 68.6
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 8.0e-42 174.9 200 48.5
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 8.3e-39 164.9 103 70.9
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.1e-38 164.5 149 50.3
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 1.8e-38 163.7 105 70.5
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 4.7e-26 122.5 81 67.9
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 7.5e-24 115.2 71 78.9
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 2.4e-22 110.2 174 38.5
Dinv25820 Davidia involucrata HOM05D007108 ORTHO05D009128 6.6e-12 75.5 46 73.9


User provided reference genes

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