Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 1.5e-95 355.1 420 100.0
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 1.5e-50 205.7 187 65.8
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 3.6e-12 78.2 144 36.8
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 6.1e-12 77.4 144 38.2
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 1.4e-11 76.3 47 80.9
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 1.4e-11 76.3 47 80.9
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 1.4e-11 76.3 47 80.9
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 1.4e-11 76.3 47 80.9
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 1.4e-11 76.3 47 80.9
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 3.0e-11 75.1 148 35.1
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 3.0e-11 75.1 134 36.6
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 5.2e-11 74.3 145 36.6
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 5.2e-11 74.3 141 34.0
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 5.2e-11 74.3 133 36.8
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 6.7e-11 73.9 134 36.6
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 6.7e-11 73.9 125 35.2
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 6.7e-11 73.9 47 78.7
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 6.7e-11 73.9 47 80.9
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 8.8e-11 73.6 141 36.9
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 8.8e-11 73.6 46 78.3
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 8.8e-11 73.6 133 34.6
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 1.1e-10 73.2 133 34.6
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 1.1e-10 73.2 140 37.1
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 2.0e-10 72.4 133 37.6
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 2.0e-10 72.4 44 77.3
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 2.0e-10 72.4 141 36.9
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 2.0e-10 72.4 140 35.7
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 2.0e-10 72.4 117 37.6
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 2.6e-10 72.0 47 76.6
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 2.6e-10 72.0 134 36.6
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 2.6e-10 72.0 47 74.5
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 3.3e-10 71.6 140 35.0
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 3.3e-10 71.6 140 35.0
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 3.3e-10 71.6 44 79.5
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 4.4e-10 71.2 140 35.0
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 4.4e-10 71.2 141 35.5
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 5.7e-10 70.9 133 35.3
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 5.7e-10 70.9 140 37.1
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 7.4e-10 70.5 140 33.6
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 9.7e-10 70.1 140 35.7
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 9.7e-10 70.1 44 75.0
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 9.7e-10 70.1 144 32.6
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 1.3e-09 69.7 144 35.4
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 1.7e-09 69.3 144 34.7
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 1.7e-09 69.3 141 33.3
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 2.2e-09 68.9 117 36.8
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 2.2e-09 68.9 140 35.0
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 2.8e-09 68.6 141 33.3
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 3.7e-09 68.2 144 34.7
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 3.7e-09 68.2 44 75.0
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 3.7e-09 68.2 44 72.7
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 3.7e-09 68.2 144 33.3
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 3.7e-09 68.2 134 32.8
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 4.8e-09 67.8 46 71.7
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 4.8e-09 67.8 44 70.5
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 4.8e-09 67.8 44 70.5
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 4.8e-09 67.8 141 34.8
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 4.8e-09 67.8 141 34.8
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 4.8e-09 67.8 141 34.8
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 4.8e-09 67.8 143 33.6
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 6.3e-09 67.4 45 73.3
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 6.3e-09 67.4 141 35.5
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 8.2e-09 67.0 140 35.0
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 8.2e-09 67.0 134 33.6
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 8.2e-09 67.0 44 70.5
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 8.2e-09 67.0 141 34.0
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 8.2e-09 67.0 45 75.6
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 8.2e-09 67.0 141 35.5
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 1.1e-08 66.6 134 35.1
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 1.1e-08 66.6 118 35.6
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 1.1e-08 66.6 140 35.0
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 1.4e-08 66.2 141 36.2
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 1.4e-08 66.2 144 32.6
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 1.4e-08 66.2 134 32.1
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 1.8e-08 65.9 133 34.6
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 1.8e-08 65.9 166 31.3
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 2.4e-08 65.5 143 32.9
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 2.4e-08 65.5 140 36.4
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 3.1e-08 65.1 143 32.9
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 3.1e-08 65.1 143 32.9
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 3.1e-08 65.1 144 33.3
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 4.1e-08 64.7 194 31.4
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 5.3e-08 64.3 143 32.9
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 5.3e-08 64.3 144 31.2
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 7.0e-08 63.9 114 36.8
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 1.2e-07 63.2 47 59.6
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 2.0e-07 62.4 171 31.0
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 2.0e-07 62.4 166 30.1
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 2.0e-07 62.4 194 31.4
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 2.6e-07 62.0 158 31.0
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 4.5e-07 61.2 45 64.4
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 4.5e-07 61.2 45 62.2
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 5.9e-07 60.8 144 31.9
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 7.7e-07 60.5 60 48.3
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 1.7e-06 59.3 144 30.6
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 3.8e-06 58.2 133 30.8
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 8.5e-06 57.0 172 30.2
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 8.5e-06 57.0 114 33.3
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 8.5e-06 57.0 175 31.4


User provided reference genes

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