Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 5.4e-237 823.9 412 100.0
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 6.8e-232 807.0 414 98.8
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 4.4e-191 671.4 418 81.8
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 4.5e-183 644.8 418 78.2
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 5.0e-134 481.9 390 63.8
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 1.9e-133 479.9 390 63.1
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 6.1e-132 474.9 390 61.0
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 1.2e-130 470.7 391 62.1
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 2.0e-130 469.9 388 61.1
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 2.8e-129 466.1 390 62.3
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.6e-127 460.3 387 61.0
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.0e-127 459.9 383 61.6
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 4.5e-127 458.8 389 60.7
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 4.5e-127 458.8 390 60.8
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 5.9e-127 458.4 387 59.7
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.9e-127 458.4 394 61.2
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 1.0e-126 457.6 389 62.5
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 1.7e-126 456.8 452 55.1
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 5.0e-126 455.3 389 60.4
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.5e-126 454.9 395 60.8
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 1.5e-125 453.8 389 60.2
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 2.5e-125 453.0 404 60.4
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 3.2e-125 452.6 392 59.7
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 4.2e-125 452.2 392 60.2
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.1e-124 449.9 408 59.1
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 2.7e-124 449.5 389 60.2
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.7e-124 449.5 387 60.5
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 2.7e-124 449.5 389 59.9
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.6e-124 449.1 389 58.6
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.6e-124 449.1 389 58.6
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 4.7e-124 448.7 397 59.2
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.3e-123 446.4 405 57.0
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 4.0e-123 445.7 383 60.6
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 8.8e-123 444.5 384 60.2
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.2e-122 444.1 390 58.2
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-122 444.1 389 58.1
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 2.0e-122 443.4 389 59.4
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.0e-122 443.4 389 59.1
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 7.5e-122 441.4 392 58.2
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.8e-122 441.0 389 58.9
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 1.3e-121 440.7 389 58.6
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 1.7e-121 440.3 388 58.5
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 2.2e-121 439.9 391 59.6
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 2.8e-121 439.5 388 58.2
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 3.7e-121 439.1 386 57.3
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 3.7e-121 439.1 386 59.1
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 4.9e-121 438.7 391 58.8
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.4e-120 437.2 394 58.6
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.8e-120 436.8 385 58.7
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.8e-120 436.8 388 57.7
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 2.4e-120 436.4 383 59.0
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 2.4e-120 436.4 389 58.9
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 2.4e-120 436.4 387 57.6
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 3.1e-120 436.0 387 59.4
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 3.1e-120 436.0 389 58.4
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 4.1e-120 435.6 388 58.0
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.6e-119 433.7 390 58.5
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.6e-119 433.7 389 57.6
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 3.5e-119 432.6 392 58.4
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.5e-119 432.2 415 56.1
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 5.9e-119 431.8 389 57.8
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 2.3e-118 429.9 387 57.9
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 2.3e-118 429.9 388 58.5
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.9e-118 429.5 387 58.4
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 1.5e-117 427.2 389 57.3
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 1.9e-117 426.8 387 56.6
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 1.9e-117 426.8 383 58.5
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 2.5e-117 426.4 385 58.2
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 4.3e-117 425.6 385 58.2
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 7.2e-117 424.9 388 57.2
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 9.5e-117 424.5 389 56.8
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 1.6e-116 423.7 395 56.5
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 3.6e-116 422.5 383 58.5
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.6e-116 422.5 418 55.7
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 4.7e-116 422.2 385 57.9
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.4e-115 420.6 390 57.2
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-115 420.6 383 56.9
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 4.0e-115 419.1 381 58.0
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 1.2e-114 417.5 381 57.7
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.2e-114 417.5 391 57.8
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 2.6e-114 416.4 379 55.9
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 5.7e-114 415.2 392 56.9
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 5.7e-114 415.2 388 56.7
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 7.5e-114 414.8 386 56.7
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 1.7e-113 413.7 392 56.6
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.2e-111 407.5 402 55.2
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 2.0e-111 406.8 416 52.9
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 2.0e-111 406.8 398 56.0
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 3.5e-111 406.0 388 55.7
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.7e-110 403.7 384 56.0
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 2.3e-110 403.3 389 56.6
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.1e-107 392.9 357 56.6
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 1.9e-104 383.6 390 53.3
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 1.2e-103 380.9 403 51.4
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 1.1e-101 374.4 388 52.3
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.9e-101 373.6 423 48.7
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.2e-98 364.4 310 60.3
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.7e-97 360.5 412 49.0
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 2.2e-97 360.1 390 51.3
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 1.0e-94 351.3 388 50.3
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 3.0e-94 349.7 391 50.4
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 8.6e-94 348.2 376 50.0
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.1e-93 347.8 376 51.1
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.1e-88 331.3 385 49.4
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 3.2e-88 329.7 263 62.4
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 1.6e-87 327.4 405 47.4
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 2.1e-87 327.0 435 45.5
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 3.5e-87 326.2 388 47.9
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 3.9e-86 322.8 418 45.7
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.3e-77 293.1 423 42.6
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 5.6e-77 292.4 371 44.5
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 3.4e-74 283.1 389 42.9
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 4.2e-72 276.2 415 40.0
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 2.7e-71 273.5 300 49.3
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.0e-70 271.6 298 49.7
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 3.5e-63 246.5 267 51.3
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 4.9e-57 226.1 220 51.8
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 7.6e-50 202.2 238 45.4
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 5.5e-48 196.1 330 40.0
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 4.3e-45 186.4 344 38.1
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 5.0e-41 172.9 142 64.1
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 1.4e-38 164.9 149 56.4
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.0e-27 125.9 109 56.9
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.0e-26 124.4 109 56.0
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.5e-26 123.6 109 56.9
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.5e-24 117.5 109 54.1
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 2.7e-23 114.0 128 49.2
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.3e-20 105.1 96 58.3
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 5.3e-19 99.8 93 49.5
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 8.5e-17 92.4 116 40.5
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 1.5e-16 91.7 122 45.1
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 5.5e-16 89.7 116 49.1
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 1.0e-14 85.5 81 56.8
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.7e-12 78.2 61 59.0
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 1.8e-11 74.7 59 59.3
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.0e-10 71.2 67 55.2
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 2.5e-08 64.3 304 23.0
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.5e-08 63.2 50 54.0
PRCOL_00001539 Prasinoderma coloniale HOM05D000059 ORTHO05D333127 3.6e-07 60.5 182 30.2
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 4.7e-07 60.1 52 51.9
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 3.0e-06 57.4 72 40.3


User provided reference genes

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