Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 0.0e+00 1108.2 572 100.0
Os07g0229200 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.5e-128 464.2 341 76.5
Os07g0118900 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 9.5e-75 285.4 476 40.5
Zm00001eb116530 Zea mays HOM05D011003 ORTHO05D012370 7.6e-72 275.8 524 37.8
Os07g0118800 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 8.9e-65 252.3 444 39.2
Os07g0113600 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 5.8e-56 223.0 482 33.8
Os07g0228900 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 3.3e-43 180.6 195 56.9
Os07g0228400 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.6e-40 171.0 276 43.1
Os07g0548100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.1e-37 161.4 467 30.2
Os07g0547700 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.8e-33 148.3 421 30.2
Os07g0228000 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 3.3e-27 127.5 164 40.2
Zm00001eb162720 Zea mays HOM05D011003 ORTHO05D012370 2.4e-25 121.3 473 29.0
Os07g0130000 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.0e-15 89.4 265 33.2
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 9.4e-14 82.8 72 63.9
Os12g0545400 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.1e-13 81.6 264 31.8
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 9.7e-11 72.8 72 54.2
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.7e-10 72.0 125 40.8
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.7e-10 72.0 125 40.8
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.7e-10 72.0 73 57.5
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.2e-10 71.6 72 50.0
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.2e-10 71.6 72 50.0
Zm00001eb127920 Zea mays HOM05D014114 ORTHO05D000368 2.2e-10 71.6 247 28.7
HanXRQChr17g0543071 Helianthus annuus HOM05D005918 ORTHO05D008619 2.8e-10 71.2 295 27.8
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 6.3e-10 70.1 132 35.6
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 6.3e-10 70.1 72 52.8
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 6.3e-10 70.1 72 52.8
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 8.2e-10 69.7 72 52.8
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 1.8e-09 68.6 72 51.4
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 2.4e-09 68.2 83 47.0
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 2.4e-09 68.2 72 51.4
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 3.1e-09 67.8 72 51.4
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 4.1e-09 67.4 72 51.4
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 4.1e-09 67.4 72 51.4
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 5.3e-09 67.0 72 52.8
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 5.3e-09 67.0 72 51.4
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 5.3e-09 67.0 72 48.6
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 5.3e-09 67.0 72 50.0
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 7.0e-09 66.6 72 48.6
CARHR170010 Cardamine hirsuta HOM05D000689 ORTHO05D000015 7.0e-09 66.6 427 25.1
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 7.0e-09 66.6 72 51.4
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 7.0e-09 66.6 72 51.4
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 7.0e-09 66.6 72 51.4
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 7.0e-09 66.6 72 51.4
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 9.1e-09 66.2 72 50.0
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 9.1e-09 66.2 72 51.4
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 9.1e-09 66.2 72 48.6
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 9.1e-09 66.2 72 50.0
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 9.1e-09 66.2 72 50.0
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.2e-08 65.9 72 48.6
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.6e-08 65.5 72 45.8
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.6e-08 65.5 72 50.0
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 1.6e-08 65.5 71 50.7
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 1.6e-08 65.5 139 36.0
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.6e-08 65.5 69 50.7
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.6e-08 65.5 69 50.7
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 1.6e-08 65.5 72 48.6
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 2.0e-08 65.1 72 48.6
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 2.0e-08 65.1 72 50.0
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 2.0e-08 65.1 83 45.8
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.0e-08 65.1 72 48.6
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.0e-08 65.1 72 48.6
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 2.0e-08 65.1 94 43.6
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 2.6e-08 64.7 72 47.2
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 2.6e-08 64.7 72 50.0
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 2.6e-08 64.7 83 45.8
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.6e-08 64.7 83 45.8
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.6e-08 64.7 83 45.8
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 2.6e-08 64.7 83 45.8
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.6e-08 64.7 131 34.4
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-08 64.3 72 48.6
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-08 64.3 72 48.6
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-08 64.3 72 48.6
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.5e-08 64.3 72 50.0
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 3.5e-08 64.3 72 48.6
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.5e-08 64.3 128 37.5
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 3.5e-08 64.3 72 45.8
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 3.5e-08 64.3 131 34.4
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.5e-08 64.3 72 50.0
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.5e-08 64.3 72 50.0
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 4.5e-08 63.9 72 51.4
Os07g0546800 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 4.5e-08 63.9 194 32.0
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 4.5e-08 63.9 83 45.8
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 4.5e-08 63.9 72 48.6
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 7.7e-08 63.2 131 34.4
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 7.7e-08 63.2 72 48.6
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.0e-07 62.8 72 47.2
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 1.0e-07 62.8 83 45.8
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.0e-07 62.8 72 48.6
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.0e-07 62.8 83 44.6
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-07 62.4 72 47.2
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-07 62.4 72 47.2
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 1.7e-07 62.0 72 50.0
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.7e-07 62.0 72 47.2
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.2e-07 61.6 72 48.6
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 2.2e-07 61.6 83 44.6
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.2e-07 61.6 72 47.2
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.2e-07 61.6 72 47.2
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.2e-07 61.6 72 47.2
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 2.2e-07 61.6 83 44.6
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 2.2e-07 61.6 72 50.0
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 2.2e-07 61.6 72 48.6
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.2e-07 61.6 72 50.0
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.9e-07 61.2 72 45.8
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 2.9e-07 61.2 71 47.9
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 3.8e-07 60.8 72 45.8
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 3.8e-07 60.8 72 47.2
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.0e-07 60.5 72 45.8
Lj3g0013576 Lotus japonicus HOM05D005918 ORTHO05D008619 5.0e-07 60.5 325 25.8
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 5.0e-07 60.5 72 47.2
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 6.5e-07 60.1 133 33.8
SGA_v2.0_scaffold342G49404 Striga asiatica HOM05D000576 ORTHO05D000368 6.5e-07 60.1 270 29.6
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 8.5e-07 59.7 72 41.7
Atru.chr6.3104 Acer truncatum HOM05D005918 ORTHO05D008619 1.1e-06 59.3 321 27.4
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.5e-06 58.9 72 40.3
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.5e-06 58.9 72 45.8
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.5e-06 58.9 101 39.6
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.5e-06 58.9 72 41.7
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.5e-06 58.9 72 45.8
CSS0021660 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 2.5e-06 58.2 284 27.8
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.5e-06 58.2 72 43.1
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.5e-06 58.2 72 43.1
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.5e-06 58.2 72 43.1
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.2e-06 57.8 72 43.1
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 5.5e-06 57.0 72 40.3
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 5.5e-06 57.0 72 41.7
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 5.5e-06 57.0 72 41.7
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 5.5e-06 57.0 139 30.9
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 5.5e-06 57.0 72 43.1
Ciclev10027046m.g Citrus clementina HOM05D000051 ORTHO05D000015 5.5e-06 57.0 280 27.9
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 7.2e-06 56.6 72 41.7
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 7.2e-06 56.6 72 41.7
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 7.2e-06 56.6 72 43.1
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 7.2e-06 56.6 129 33.3
THA.LOC104818124 Tarenaya hassleriana HOM05D000051 ORTHO05D000015 7.2e-06 56.6 386 26.7
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 9.4e-06 56.2 139 30.9


User provided reference genes

Program Settings