Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 3.1e-93 345.1 176 100.0
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 1.5e-58 229.9 124 93.5
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 8.9e-56 220.7 126 86.5
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 1.3e-54 216.9 126 84.1
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 3.5e-52 208.8 126 81.7
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 3.0e-51 205.7 124 80.6
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 3.3e-50 202.2 123 80.5
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 4.3e-50 201.8 125 77.6
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 5.6e-50 201.4 124 78.2
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 5.6e-50 201.4 124 77.4
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 7.3e-50 201.1 124 79.0
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 2.1e-49 199.5 124 77.4
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 3.6e-49 198.7 124 75.8
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 3.6e-49 198.7 124 76.6
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 2.3e-48 196.1 124 75.8
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 2.3e-48 196.1 124 76.6
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 2.3e-48 196.1 124 78.2
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 4.0e-48 195.3 124 79.8
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 4.0e-48 195.3 124 79.8
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 4.0e-48 195.3 124 79.8
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 4.0e-48 195.3 123 77.2
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 5.2e-48 194.9 124 75.8
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 5.2e-48 194.9 124 79.0
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 8.9e-48 194.1 123 77.2
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.2e-47 193.7 124 75.0
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 1.2e-47 193.7 123 75.6
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.5e-47 193.4 124 75.8
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 1.5e-47 193.4 124 76.6
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.5e-47 193.4 124 75.0
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 1.5e-47 193.4 123 77.2
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 1.5e-47 193.4 123 78.0
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 1.5e-47 193.4 124 77.4
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 2.0e-47 193.0 124 74.2
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.0e-47 193.0 123 78.0
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.0e-47 193.0 123 78.0
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 2.0e-47 193.0 123 78.0
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 3.4e-47 192.2 123 78.0
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 3.4e-47 192.2 123 77.2
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 4.4e-47 191.8 123 75.6
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 5.8e-47 191.4 124 72.6
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 5.8e-47 191.4 124 75.8
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 5.8e-47 191.4 123 73.2
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 7.5e-47 191.0 123 75.6
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 7.5e-47 191.0 124 77.4
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 7.5e-47 191.0 123 77.2
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 7.5e-47 191.0 123 77.2
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 7.5e-47 191.0 123 77.2
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 7.5e-47 191.0 123 76.4
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 7.5e-47 191.0 123 77.2
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 7.5e-47 191.0 123 75.6
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 9.8e-47 190.7 124 76.6
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 9.8e-47 190.7 123 76.4
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 9.8e-47 190.7 123 75.6
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.3e-46 190.3 116 80.2
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.3e-46 190.3 116 80.2
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 1.3e-46 190.3 123 76.4
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 1.3e-46 190.3 124 75.8
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 1.7e-46 189.9 123 74.0
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 1.7e-46 189.9 123 76.4
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 1.7e-46 189.9 124 74.2
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 1.7e-46 189.9 123 75.6
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 2.2e-46 189.5 123 76.4
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 2.9e-46 189.1 123 75.6
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 2.9e-46 189.1 123 74.0
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 2.9e-46 189.1 123 74.0
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 4.9e-46 188.3 123 73.2
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 4.9e-46 188.3 144 67.4
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 6.4e-46 188.0 123 73.2
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 6.4e-46 188.0 123 74.0
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 6.4e-46 188.0 116 78.4
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 8.3e-46 187.6 123 74.0
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 8.3e-46 187.6 123 75.6
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 8.3e-46 187.6 123 74.0
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 1.1e-45 187.2 123 74.0
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 1.1e-45 187.2 157 65.0
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 1.1e-45 187.2 123 74.0
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 1.1e-45 187.2 123 74.8
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 1.4e-45 186.8 123 74.0
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 1.4e-45 186.8 123 73.2
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 1.4e-45 186.8 124 74.2
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.4e-45 186.8 124 75.8
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 1.9e-45 186.4 123 73.2
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 3.2e-45 185.7 121 71.9
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 3.2e-45 185.7 123 73.2
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 3.2e-45 185.7 123 73.2
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 3.2e-45 185.7 116 77.6
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 4.1e-45 185.3 123 71.5
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 5.4e-45 184.9 123 74.0
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 7.0e-45 184.5 123 72.4
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 7.0e-45 184.5 123 73.2
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 9.2e-45 184.1 122 76.2
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 1.2e-44 183.7 123 73.2
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 1.2e-44 183.7 123 72.4
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 1.2e-44 183.7 123 74.8
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 1.2e-44 183.7 123 71.5
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 1.2e-44 183.7 123 71.5
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 2.0e-44 183.0 123 72.4
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 2.7e-44 182.6 123 72.4
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 4.6e-44 181.8 123 72.4
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 4.6e-44 181.8 123 72.4
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 4.6e-44 181.8 123 72.4
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 4.6e-44 181.8 123 72.4
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 4.6e-44 181.8 123 72.4
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 6.0e-44 181.4 123 71.5
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 7.8e-44 181.0 122 75.4
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 7.8e-44 181.0 123 72.4
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 1.0e-43 180.6 123 71.5
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 1.0e-43 180.6 123 69.9
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 1.7e-43 179.9 123 70.7
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 1.7e-43 179.9 123 69.1
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 2.3e-43 179.5 139 65.5
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 2.3e-43 179.5 123 71.5
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 2.3e-43 179.5 124 72.6
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 3.9e-43 178.7 123 70.7
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 6.6e-43 177.9 122 72.1
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 1.1e-42 177.2 122 73.8
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 2.5e-42 176.0 124 70.2
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 4.3e-42 175.3 122 70.5
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 4.3e-42 175.3 123 68.3
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 5.6e-42 174.9 124 72.6
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 5.6e-42 174.9 124 72.6
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 7.3e-42 174.5 122 72.1
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 9.5e-42 174.1 122 70.5
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 3.6e-41 172.2 122 68.0
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 2.3e-40 169.5 116 71.6
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 1.2e-39 167.2 160 55.6
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 9.9e-39 164.1 139 61.9
Glyma.14G126300 Glycine max HOM05D003627 ORTHO05D004307 1.3e-38 163.7 112 68.8
SGA_v2.0_scaffold22G09938 Striga asiatica HOM05D003627 ORTHO05D004307 1.3e-38 163.7 124 66.9
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 2.9e-38 162.5 196 46.9
Actinidia14624 Actinidia chinensis HOM05D003627 ORTHO05D004307 6.4e-38 161.4 100 77.0
TWI32G0136 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 6.4e-38 161.4 123 66.7
Os08g0246400 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 4.1e-37 158.7 99 82.8
TWI34G0954 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 4.1e-37 158.7 123 65.9
BraA02t08939Z Brassica rapa HOM05D003627 ORTHO05D004307 7.1e-37 157.9 104 76.0
TAR636G0318 Trochodendron aralioides HOM05D003627 ORTHO05D004307 7.1e-37 157.9 115 67.0
BolC2t12016H Brassica oleracea HOM05D003627 ORTHO05D004307 1.2e-36 157.1 102 77.5
Nn8g39358 Nelumbo nucifera HOM05D003627 ORTHO05D004307 1.2e-36 157.1 110 71.8
QL02p023157 Quercus lobata HOM05D003627 ORTHO05D004307 4.6e-36 155.2 101 74.3
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 4.6e-36 155.2 104 74.0
SalBow4G0188 Salvia bowleyana HOM05D003627 ORTHO05D004307 7.8e-36 154.5 100 73.0
Aa31LG2G19380 Aethionema arabicum HOM05D003627 ORTHO05D004307 3.0e-35 152.5 101 70.3
Actinidia13260 Actinidia chinensis HOM05D003627 ORTHO05D004307 3.9e-35 152.1 101 72.3
Ciclev10009887m.g Citrus clementina HOM05D003627 ORTHO05D004307 6.6e-35 151.4 101 72.3
Dinv30181 Davidia involucrata HOM05D003627 ORTHO05D004307 6.6e-35 151.4 101 71.3
Sabra06G0195600 Salix brachista HOM05D003627 ORTHO05D004307 6.6e-35 151.4 102 71.6
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 6.6e-35 151.4 94 78.7
Hund03017 Selenicereus undatus HOM05D003627 ORTHO05D004307 1.5e-34 150.2 103 69.9
Sc06g0000590 Simmondsia chinensis HOM05D003627 ORTHO05D004307 9.5e-34 147.5 99 70.7
Gorai.013G110700 Gossypium raimondii HOM05D003627 ORTHO05D004307 1.2e-33 147.1 101 70.3
QL02p087302 Quercus lobata HOM05D003627 ORTHO05D004307 1.1e-32 144.1 94 73.4
Rhsim02G0194100 Rhododendron simsii HOM05D003627 ORTHO05D004307 1.1e-32 144.1 100 70.0
Gohir.D03G071300 Gossypium hirsutum HOM05D003627 ORTHO05D004307 3.1e-32 142.5 101 68.3
TAR625G0096 Trochodendron aralioides HOM05D003627 ORTHO05D004307 4.0e-32 142.1 101 67.3
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 3.4e-31 139.0 220 40.9
arahy.Tifrunner.gnm1.ann1.8QVL0P Arachis hypogaea HOM05D003627 ORTHO05D004307 4.4e-31 138.7 162 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1095 Anthoceros agrestis HOM05D003627 ORTHO05D004307 1.3e-30 137.1 107 65.4
Oeu030075.1 Olea europaea HOM05D003627 ORTHO05D004307 2.2e-30 136.3 85 74.1
SalBow8G5246 Salvia bowleyana HOM05D003627 ORTHO05D004307 1.4e-29 133.7 85 72.9
SalBow8G5369 Salvia bowleyana HOM05D003627 ORTHO05D004307 1.4e-29 133.7 85 72.9
vmacro05197 Vaccinium macrocarpon HOM05D003627 ORTHO05D004307 1.9e-29 133.3 90 70.0
Pp3c25_1520 Physcomitrium patens HOM05D003627 ORTHO05D004307 7.1e-29 131.3 115 60.0
Pp3c6_18020 Physcomitrium patens HOM05D003627 ORTHO05D004307 1.6e-28 130.2 114 60.5
HanXRQChr06g0182081 Helianthus annuus HOM05D003627 ORTHO05D004307 6.0e-28 128.3 79 82.3
Gohir.1Z049369 Gossypium hirsutum HOM05D003627 ORTHO05D004307 7.8e-28 127.9 78 78.2
Mapoly0020s0108 Marchantia polymorpha HOM05D003627 ORTHO05D004307 1.7e-27 126.7 123 55.3
Pp3c10_14460 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.3e-26 122.5 100 63.0
Nitab4.5_0000010g0100 Nicotiana tabacum HOM05D003627 ORTHO05D004307 4.3e-26 122.1 98 62.2
Ah.10g026070 Amaranthus hybridus HOM05D003627 ORTHO05D004307 9.6e-26 120.9 86 68.6
CBR_g8907 Chara braunii HOM05D003627 ORTHO05D004307 9.6e-26 120.9 116 55.2
SMO169G0058 Selaginella moellendorffii HOM05D003627 ORTHO05D004307 2.1e-25 119.8 118 54.2
Haze_21577 Corylus avellana HOM05D003627 ORTHO05D004307 6.2e-25 118.2 84 66.7
MCO05G573 Micromonas commoda HOM05D003627 ORTHO05D004307 4.4e-23 112.1 123 51.2
Nn1g01248 Nelumbo nucifera HOM05D001793 ORTHO05D001938 7.6e-23 111.3 89 58.4
PRCOL_00006283 Prasinoderma coloniale HOM05D003627 ORTHO05D004307 1.3e-22 110.5 116 51.7
Cre06.g262700 Chlamydomonas reinhardtii HOM05D003627 ORTHO05D004307 1.1e-21 107.5 119 50.4
MBI04_g38347_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 9.3e-21 104.4 76 69.7
CAN.G536.8 Capsicum annuum HOM05D003627 ORTHO05D001832 3.1e-16 89.4 81 60.5
AUR62030679 Chenopodium quinoa HOM05D003627 ORTHO05D004307 6.9e-16 88.2 83 59.0
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 3.8e-14 82.4 67 59.7
Ah.10g026060 Amaranthus hybridus HOM05D003627 ORTHO05D004307 6.2e-09 65.1 39 79.5
DCAR_029199 Daucus carota HOM05D003627 ORTHO05D004307 1.4e-08 63.9 39 76.9
CiPaw.03G239400 Carya illinoinensis HOM05D003627 ORTHO05D004307 4.0e-08 62.4 44 59.1
CAN.G538.10 Capsicum annuum HOM05D003627 ORTHO05D000766 5.3e-08 62.0 42 71.4
PGR044G2108 Punica granatum HOM05D007797 ORTHO05D009741 5.8e-07 58.5 88 42.0


User provided reference genes

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