Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0160300 Oryza sativa ssp. japonica HOM05D007512 ORTHO05D009524 5.8e-112 407.5 200 100.0
Zm00001eb300410 Zea mays HOM05D007512 ORTHO05D009524 1.7e-79 299.7 188 78.2
MBI18_g45404_MAGBIO Magnolia biondii HOM05D007512 ORTHO05D009524 1.7e-58 229.9 193 57.0
Cfa005459 Carpinus fangiana HOM05D007512 ORTHO05D009524 5.9e-56 221.5 196 58.7
Haze_01852 Corylus avellana HOM05D007512 ORTHO05D009524 1.0e-55 220.7 197 58.4
CiPaw.09G218400 Carya illinoinensis HOM05D007512 ORTHO05D009524 1.7e-55 219.9 201 56.7
GSVIVG01020824001 Vitis vinifera HOM05D007512 ORTHO05D009524 2.5e-54 216.1 186 59.1
RcHm_v2.0_Chr2g0152451 Rosa chinensis HOM05D007512 ORTHO05D009524 3.2e-54 215.7 196 55.6
Nn7g38060 Nelumbo nucifera HOM05D007512 ORTHO05D009524 2.7e-53 212.6 195 53.3
HanXRQChr05g0157121 Helianthus annuus HOM05D007512 ORTHO05D009524 1.8e-52 209.9 208 53.8
CAN.G946.8 Capsicum annuum HOM05D007512 ORTHO05D009524 4.0e-52 208.8 185 56.2
Nn7g38052 Nelumbo nucifera HOM05D007512 ORTHO05D009524 1.2e-51 207.2 189 54.0
Ciclev10032522m.g Citrus clementina HOM05D007512 ORTHO05D009524 1.5e-51 206.8 205 51.2
MBI18_g43440_MAGBIO Magnolia biondii HOM05D007512 ORTHO05D009524 2.0e-51 206.5 193 53.4
ECA246G3016 Erigeron canadensis HOM05D007512 ORTHO05D009524 4.4e-51 205.3 202 52.5
Sabra02G0045700 Salix brachista HOM05D007512 ORTHO05D009524 5.7e-51 204.9 195 52.8
unitig_747.g21446 Utricularia gibba HOM05D007512 ORTHO05D009524 9.8e-51 204.1 183 53.6
CSS0030250 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 1.3e-50 203.8 194 54.1
LjContig00049g0018887 Lotus japonicus HOM05D007512 ORTHO05D009524 2.2e-50 203.0 190 54.2
Migut.J01325 Erythranthe guttata HOM05D007512 ORTHO05D009524 2.8e-50 202.6 199 51.8
HPP92_026664 Vanilla planifolia HOM05D007512 ORTHO05D009524 2.8e-50 202.6 195 54.4
Glyma.02G283200 Glycine max HOM05D007512 ORTHO05D009524 3.7e-50 202.2 176 59.1
PGSC0003DMG400045865 Solanum tuberosum HOM05D007512 ORTHO05D009524 3.7e-50 202.2 187 52.4
PGSC0003DMG402000923 Solanum tuberosum HOM05D007512 ORTHO05D009524 3.7e-50 202.2 187 52.4
Solyc07g044970.1 Solanum lycopersicum HOM05D007512 ORTHO05D009524 4.8e-50 201.8 187 52.4
AUR62004262 Chenopodium quinoa HOM05D007512 ORTHO05D009524 6.3e-50 201.4 193 53.9
Prupe.3G178900 Prunus persica HOM05D007512 ORTHO05D009524 6.3e-50 201.4 192 52.1
Sopen07g023500 Solanum pennellii HOM05D007512 ORTHO05D009524 6.3e-50 201.4 187 52.4
QL08p045474 Quercus lobata HOM05D007512 ORTHO05D009524 8.3e-50 201.1 188 56.9
Manes.12G132100 Manihot esculenta HOM05D007512 ORTHO05D009524 1.1e-49 200.7 194 52.1
Nitab4.5_0007814g0010 Nicotiana tabacum HOM05D007512 ORTHO05D009524 1.1e-49 200.7 194 50.5
Eucgr.A02034 Eucalyptus grandis HOM05D007512 ORTHO05D009524 3.1e-49 199.1 177 58.8
Psat2g017680 Pisum sativum HOM05D007512 ORTHO05D009524 3.1e-49 199.1 186 53.8
Cpa.g.sc53.33 Carica papaya HOM05D007512 ORTHO05D009524 5.4e-49 198.4 189 52.9
Gorai.007G071100 Gossypium raimondii HOM05D007512 ORTHO05D009524 5.4e-49 198.4 196 50.5
Potri.002G056400 Populus trichocarpa HOM05D007512 ORTHO05D009524 5.4e-49 198.4 189 53.4
FvH4_6g38852 Fragaria vesca HOM05D007512 ORTHO05D009524 7.0e-49 198.0 188 53.2
Gohir.A11G061700 Gossypium hirsutum HOM05D007512 ORTHO05D009524 7.0e-49 198.0 196 50.5
TWI14G0908 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 7.0e-49 198.0 200 52.5
Peaxi162Scf00359g00113 Petunia axillaris HOM05D007512 ORTHO05D009524 9.1e-49 197.6 188 54.3
TAR626G1484 Trochodendron aralioides HOM05D007512 ORTHO05D009524 9.1e-49 197.6 192 53.1
Rhsim12G0013200 Rhododendron simsii HOM05D007512 ORTHO05D009524 1.6e-48 196.8 197 54.3
AUR62042750 Chenopodium quinoa HOM05D007512 ORTHO05D009524 5.9e-48 194.9 179 55.9
MELO3C022965.2 Cucumis melo HOM05D007512 ORTHO05D009524 5.9e-48 194.9 196 52.0
Nitab4.5_0001552g0120 Nicotiana tabacum HOM05D007512 ORTHO05D009524 1.0e-47 194.1 194 50.0
ClCG11G016580 Citrullus lanatus HOM05D007512 ORTHO05D009524 1.3e-47 193.7 196 50.0
Duzib147G0049 Durio zibethinus HOM05D007512 ORTHO05D009524 1.3e-47 193.7 197 49.7
CsaV3_4G032050 Cucumis sativus L. HOM05D007512 ORTHO05D009524 1.7e-47 193.4 196 51.0
Gohir.D11G065833 Gossypium hirsutum HOM05D007512 ORTHO05D009524 2.9e-47 192.6 185 51.4
Lj1C588G3 Lonicera japonica HOM05D007512 ORTHO05D009524 2.9e-47 192.6 191 53.4
SGA_v2.0_scaffold45G17047 Striga asiatica HOM05D007512 ORTHO05D009524 2.9e-47 192.6 207 49.8
Gohir.D11G065600 Gossypium hirsutum HOM05D007512 ORTHO05D009524 3.8e-47 192.2 196 49.5
Phvul.008G196000 Phaseolus vulgaris HOM05D007512 ORTHO05D009524 3.8e-47 192.2 194 53.6
VMungo0647G1345 Vigna mungo HOM05D007512 ORTHO05D009524 5.0e-47 191.8 184 53.8
Dinv27197 Davidia involucrata HOM05D007512 ORTHO05D009524 6.5e-47 191.4 171 55.6
Thecc.01G167000 Theobroma cacao HOM05D007512 ORTHO05D009524 2.5e-46 189.5 193 49.7
Oeu021245.2 Olea europaea HOM05D007512 ORTHO05D009524 7.2e-46 188.0 189 50.3
Sc23g0003420 Simmondsia chinensis HOM05D007512 ORTHO05D009524 7.2e-46 188.0 190 53.7
arahy.Tifrunner.gnm1.ann1.EFEG4J Arachis hypogaea HOM05D007512 ORTHO05D009524 1.6e-45 186.8 191 51.8
Ah.05g175540 Amaranthus hybridus HOM05D007512 ORTHO05D009524 3.6e-45 185.7 183 50.8
Lalb_Chr11g0069491 Lupinus albus HOM05D007512 ORTHO05D009524 4.7e-45 185.3 189 48.7
COL.COLO4_29884 Corchorus olitorius HOM05D007512 ORTHO05D009524 8.0e-45 184.5 192 47.9
Medtr5g090740 Medicago truncatula HOM05D007512 ORTHO05D009524 8.0e-45 184.5 191 48.2
TPR.G8778 Trifolium pratense HOM05D007512 ORTHO05D009524 4.0e-44 182.2 184 48.4
ATR0763G176 Amborella trichopoda HOM05D007512 ORTHO05D009524 6.8e-44 181.4 195 49.2
Gohir.A11G061633 Gossypium hirsutum HOM05D007512 ORTHO05D009524 8.9e-44 181.0 196 47.4
Ca_06252_v3 Cicer arietinum L. HOM05D007512 ORTHO05D009524 1.2e-43 180.6 182 51.1
Sed0022455 Sechium edule HOM05D007512 ORTHO05D009524 4.4e-43 178.7 196 45.9
CSS0045166 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 1.7e-42 176.8 194 50.5
Aqoxy1G01494 Aquilegia oxysepala HOM05D007512 ORTHO05D009524 2.8e-42 176.0 194 47.9
SEGI_32907 Sequoiadendron giganteum HOM05D007512 ORTHO05D009524 2.8e-42 176.0 184 50.5
CAN.G358.11 Capsicum annuum HOM05D007512 ORTHO05D009524 1.6e-40 170.2 199 45.2
AagrBONN_evm.TU.Sc2ySwM_368.3309 Anthoceros agrestis HOM05D007512 ORTHO05D009524 1.5e-38 163.7 190 46.8
Mapoly0032s0087 Marchantia polymorpha HOM05D007512 ORTHO05D009524 1.3e-34 150.6 207 44.4
Lsat_1_v5_gn_5_21320 Lactuca sativa HOM05D007512 ORTHO05D009524 3.0e-31 139.4 189 42.3
Pp3c26_9780 Physcomitrium patens HOM05D007512 ORTHO05D009524 5.6e-30 135.2 244 33.2
Pp3c3_10350 Physcomitrium patens HOM05D007512 ORTHO05D009524 2.1e-29 133.3 246 33.7
Actinidia25705 Actinidia chinensis HOM05D007512 ORTHO05D009524 3.7e-26 122.5 179 41.3
SMO367G0698 Selaginella moellendorffii HOM05D007512 ORTHO05D009524 3.9e-23 112.5 203 37.4
PGR142G3775 Punica granatum HOM05D007512 ORTHO05D009524 5.0e-23 112.1 186 37.1
Nitab4.5_0000241g0240 Nicotiana tabacum HOM05D007512 ORTHO05D009524 8.6e-23 111.3 201 33.8
Atru.chr6.2019 Acer truncatum HOM05D007512 ORTHO05D009524 3.3e-22 109.4 91 56.0
Actinidia25706 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.4e-20 104.0 188 35.1
Actinidia02491 Actinidia chinensis HOM05D007512 ORTHO05D009524 5.8e-19 98.6 196 34.7
Actinidia18710 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.3e-18 97.4 195 31.3
Actinidia40448 Actinidia chinensis HOM05D007512 ORTHO05D009524 6.4e-18 95.1 180 34.4
Actinidia24467 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.9e-17 93.6 126 43.7
Actinidia24468 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.4e-17 93.2 170 35.9
CSS0013803 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 4.1e-17 92.4 171 31.0
Actinidia02493 Actinidia chinensis HOM05D007512 ORTHO05D009524 9.2e-17 91.3 181 33.1
TWI36G1125 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 2.1e-16 90.1 169 30.8
FAN14G4311 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.7e-16 89.7 100 47.0
FvH4_6g38850 Fragaria vesca HOM05D000876 ORTHO05D000285 5.1e-15 85.5 91 48.4
Actinidia18709 Actinidia chinensis HOM05D007512 ORTHO05D009524 5.2e-12 75.5 179 27.4
Actinidia22804 Actinidia chinensis HOM05D007512 ORTHO05D009524 6.8e-12 75.1 209 26.8
Ca_06242_v3 Cicer arietinum L. HOM05D007512 ORTHO05D009524 2.6e-11 73.2 102 40.2
Actinidia14260 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.2e-10 70.1 76 47.4
CSS0000822 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D009524 5.4e-09 65.5 116 29.3
Sabra09G0120600 Salix brachista HOM05D000125 ORTHO05D020513 2.3e-07 60.1 142 31.0
Actinidia09356 Actinidia chinensis HOM05D007512 ORTHO05D009524 3.0e-07 59.7 105 32.4


User provided reference genes

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